2025-07-09 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name DATABASE_REFERENCES DATA_COLLECTION em_software _em_software.name OTHER atom_sites _atom_sites.fract_transf_matrix[1][1] _atom_sites.fract_transf_matrix[2][2] _atom_sites.fract_transf_matrix[3][3] STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond database_2 em_admin pdbx_entry_details pdbx_modification_feature _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update DATA_COLLECTION em_admin em_software _em_admin.last_update _em_software.name PDBe PDBe 2017-01-31 2017-02-15 2017-03-08 2025-07-09 Cryo-EM structure of a Separase-Securin complex from Caenorhabditis elegans at 3.8 A resolution Boland A Martin TG caspase, cell cycle, cohesin, cleavage Boland A Martin TG Zhang Z Yang J Bai XC Chang L Scheres SH Barford D Cryo-EM structure of a metazoan separase-securin complex at near-atomic resolution. Nat. Struct. Mol. Biol. US 24 414 418 2017 28263324 doi:10.1038/nsmb.3386 1545-9985 5mz6 FULLOVERLAP Caenorhabditis elegans Separase-Securin complex Caenorhabditis elegans Separase-Securin complex 0 1 2
C. elegans Separase-Securin complex at 3.8 Angstrom resolution refined with Relion.
Caenorhabditis elegans 0.17 SEParase Caenorhabditis elegans 0.14431598399999998 1 Trichoplusia ni LEVO MKITNKSVDKQHIEKLDELRKNVSCTVIGFAEQTAELQQEISELFIAEFGVNGPIDMNSLSKLARITSYYASSEYFQGLA KYQRTACKMFITWQTLRKEAMECRSKDREIFASIPAKLCFFYFYNGELCRAVVCLLDYIDLSDDTLAKEAALRWLMFLGE TELIEKKLKTWKMDKSSKDMFSATEFAMNYLKKSEYRVEMLEKLMKLRDKVKSDPTRSFSRYELASYVSWLCSTLSNVPV GSALRECEFPDRVSHIQEAALKSDSLVRNRIPGLASSQFDNSVNASIWPFLDGHQEDSNYYVHIGSTIAWHFEMRRECAL VNVTTAQTRDSMSAMILNLRVALKSASFFRVLQTTNTLAYYSSIIEEAGSEKNAKLMRVSCVNLLSSNPIIVRCSTPKET GATSRAHTPMAGSSVSEKQNTMRPDLADLLGDLELLDEQSFHPITRSCVCNVCTIYPLHSSFAAEYMMSYAIHSDFSQLS IKHFNDEFARIRERGMSSQVLMHRDSSVRPRPNIIQNEIFGMCVIRWLTKKLDSKESADEDTMEIFNNALKIVRYLQQRT TDMILAVTQLGRQLEFPMECNYSWMRPTIRKPRVKATIDCAVDILRAVSPFGRRPKVEKLEKNLQPFDKERFEKVRLAMR NEMNHYGHILYREWRCRLFAYVGRTSRDPWEAAYAWAESTQIGARNAVQSRLEKCKRGLVTMSGHDRFKTCVQSMPDEMT LVQIAMADDKTIYLVKLHADRDPIIMPLAHYSQAVELMDKFTFLLDEDEMIAKYPGDITPEEFWKRRKIVDGRMMTFVDE VQKHFLGVAASLLMPSGQLGPKAAELAIKIHKLSKGGLLLGEAKEMVYQSKLMDAKSWEALILRFCEMRTTDEKFKSFLP LMHRNSVEVMNQDDSIVTEKKYTYLVICPHLSQFCWERLPIFDEYPYVGRQVSIHSTFSQLEAMKSQEKQIPLQIDVQNA YYILDPDNNLGETQKRMVEYINKFNWEGTVGSAPKSNEISAALSQRDAFFFIGHGSGSSVMPRSVLKQSTCNAISLLMGC GSVRTIPQALGFDGKTAILDYAMAKCPLIVGCLWTVTDGEIDRFLIRMIDDCFEDSKSLTGIDKLRQLSEAMHEARSKAR LKYLTGAAVVMYGLPVVAKQTTPFVEKDQRNLPQTPKTSARTSMRMETVPKTPKQEFVTSKSVPMTPIFSNNENKSPSRA RMPSRVLKTPRQVKTFQEEDDEAPKRSTTRQLKPLVAPPIPATPTTRTTRSSARTPSRSRNL G5ED39 Interactor of FizzY protein Caenorhabditis elegans 0.027027646 1 Trichoplusia ni LEVO MEDLNFEERGSTQIPASLQQHFSAKLGRQNELEKTPSRGGLGLVVNSSKTPGGKSLQSLASACKVPPSTKKNTIPIAFEC YEDETDDQIADVATIKKTEKHPCSPIDTANRCETFDSLAADIEDDMLNLEDQDVVLSEDRPYGDVIDPAESEAEALAELG VEEWDSYPPIDPASRIGDDFNYVLRTEDFAEEGDVKLEETRHRTVIADIDEVKMSKAERNELFSMLADDLDSYDLLAEEA NLPL Q18235 singleParticle particle 0.02 7.8 Quantifoil R1.2/1.3 GOLD 300 GRAPHENE OXIDE HOLEY ARRAY GLOW DISCHARGE AIR
Glow discharging was performed before applying graphene oxide solution onto the grid. Grid was washed three times, dried and sample was applied. For detailed information see: https://figshare.com/articles/Graphene_Oxide_Grid_Preparation/3178669
 ETHANE 100 277
Custom Manual Plunger.
Monodisperse sample
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF -20 20 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 3710 3710 0.8 1.25 1 Gctf PHASE FLIPPING AND AMPLITUDE CORRECTION
Initial model was created using SIMPLE PRIME
 C1 3.8 FSC 0.143 CUT-OFF RELION 2.0 103696 ANGULAR RECONSTITUTION RELION 2.0 ANGULAR RECONSTITUTION RELION 2.0 emd_3583.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 180 180 180 0 0 0 180 180 180 257.4 257.4 257.4 90.0 90.0 90.0 X Y Z -0.29977334 0.39163244 0.00042302595 0.009249026 1.43 1.43 1.43 0.1 AUTHOR Map of the C. elegans Separase-Securin complex. Manual B-factor sharpening of 140 applied. AB INITIO MODEL REAL