2017-11-08 REL PDBe PDBe PDBe 2017-01-10 2017-02-08 2017-08-02 2017-11-08 VipA-N2/VipB contracted sheath of type VI secretion system Wang J Brackmann M Castano-Diez D Kudryashev M Goldie K Maier T Stahlberg H Basler M Wang J Brackmann M Castano-Diez D Kudryashev M Goldie KN Maier T Stahlberg H Basler M Cryo-EM structure of the extended type VI secretion system sheath-tube complex. Nat Microbiol UK 2 1507 1512 2017 28947741 doi:10.1038/s41564-017-0020-7 2058-5276 EMD-3567 associated EM volume 5myu FULLOVERLAP Type VI secretion system sheath Type VI secretion system sheath 0 1 2 Vibrio cholerae VipA LEVO MSKEGSVAPKERINIKYIPATGDAQAEAEVELPLKTLVVGDFKGHAEQTPLEERATVTVDKNNFEAVMRESE LKITATVKNKLTDDENAELPVELNFKSLADFAPDAVASQVPELKKLIELREALVALKGPLGNIPAFRERL QSLLNSEESREKLLAELNL VipB LEVO MMSTTEKVLERPQLAQGSLLDEIMAQTRIAPSEEGYDIAKKGVAAFIENLMGSQHSAEPVNKSLVDQMLV ELDKKISAQMDEILHNSQFQAMESAWRGLKLFVDRTDFRENNKVEILHVTKDELLEDFEFAPETAQSGLY KHVYSAGYGQFGGEPVGAIIGNYAFTPSTPDMKLLQYMGALGAMAHAPFISSVGPEFFGIDSFEELPNIK DLKSTFESPKYTKWRSLRESEDARYLGLTAPRFLLRVPYDPIENPVKSFNYAENVSASHEHYLWGNTAFA FATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMGALQSKIPTEVLITDRKEFELAEEGFIALTMR KGSDNAAFFSANSIQKPKVFPNTKEGKEAETNYKLGTQLPYMMIINRLAHYVKVLQREQIGAWKERQDLE RELNSWIKQYVADQENPPADVRSRRPLRAARIEVMDVEGNPGWYQVSLSVRPHFKYMGANFELSLVGRLD QA helical helicalArray 7.5 ETHANE
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) COUNTING 1-30 1 186 9.0 30.0 1 1 21.7 29.4 C6 4.0 FSC 0.143 CUT-OFF RELION 2
RELION2, 3D auto-refine
7000 RELION 2 11620 EMAN 2.1 e2helixboxer.py cylinder NOT APPLICABLE emd_3567.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 128 76 76 192 360 360 128 374.04 374.04 132.992 90.0 90.0 90.0 X Y Z -0.05793927 0.097034894 0.0009659687 0.010127282 1.039 1.039 1.039 0.02 AUTHOR RIGID BODY FIT Cross-correlation coefficient