26S proteasome in presence of ATP (s2)

2024-05-15 REL PDBe PDBe PDBe 2016-12-16 2017-01-25 2017-03-08 2024-05-15 German Research Foundation SFB-1035 Germany National Science Foundation PHY1430124 United States National Institutes of Health 9P41GM104601 United States 26S proteasome in presence of ATP (s2) Wehmer M Rudack T Macromolecular complex, 26S proteasome, Protease, Hydrolase Wehmer M Rudack T Beck F Aufderheide A Pfeifer G Plitzko JM Forster F Schulten K Baumeister W Sakata E Structural insights into the functional cycle of the ATPase module of the 26S proteasome. Proc. Natl. Acad. Sci. U.S.A. US 114 1305 1310 2017 28115689 doi:10.1073/pnas.1621129114 1091-6490 0040 PNASA6 5mpa FULLOVERLAP 5mpe unknown 26S proteasome of Saccharomyces cerevisiae in presence of ATP (s2) 26S proteasome of Saccharomyces cerevisiae in presence of ATP (s2) 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 Saccharomyces cerevisiae S288c 1.7 Proteasome subunit alpha type-1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.02803383 2 LEVO MSGAAAASAAGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIG MVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPA GYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAEN IEERLVAIAEQD P21243 3.4.25.1 Proteasome subunit alpha type-2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.027191828 2 LEVO MTDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGP DYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWK ATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTS QEINDRLEAL P23639 3.4.25.1 Proteasome subunit alpha type-3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.02874823 2 LEVO MGSRRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGL TADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGW KAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILV KTGITKKDEDEEADEDMK P23638 3.4.25.1 Proteasome subunit alpha type-4 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.028478111 2 LEVO MSGYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNA DSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWS AQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQEK QEQQEQDKKKKSNH P40303 3.4.25.1 Proteasome subunit alpha type-5 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.028649085999999997 2 LEVO MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSG LTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEP SGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELI KELKEKEAAESPEEADVEMS P32379 3.4.25.1 Proteasome subunit alpha type-6 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.025634 2 LEVO MFRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPD ARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTA IGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI P40302 3.4.25.1 Probable proteasome subunit alpha type-7 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.031575068 2 LEVO MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSG LIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGY KGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAI DFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEGDIHLE P21242 3.4.25.1 Proteasome subunit beta type-1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.023573603999999998 2 LEVO MNGIQVDINRLKKGEVSLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQY HLELYTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKN FRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIFYPDEYEQL P38624 3.4.25.1 Proteasome subunit beta type-2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.028299888999999998 2 LEVO MAGLSFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAAD TEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGS LAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEKQKSYKFPRGTTA VLKESIVNICDIQEEQVDITA P25043 3.4.25.1 Proteasome subunit beta type-3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.022627842 2 LEVO MSDPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTLNEMFRYKTNLYKLKEER AIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP EDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD P25451 3.4.25.1 Proteasome subunit beta type-4 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.022545675999999997 2 LEVO MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDL LKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQAQ P22141 3.4.25.1 Proteasome subunit beta type-5 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.031670539 2 LEVO MQAIADSFSVPNRLVKELQYDNEQNLESDFVTGASQFQRLAPSLTVPPIASPQQFLRAHTDDSRNPDCKIKIAHGTTTLA FRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSN LVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAA HRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEEGSFNNVIG P30656 3.4.25.1 Proteasome subunit beta type-6 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.026905076 2 LEVO MATIASEYSSEASNTPIEHQFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADG DALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGA AASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKR D P23724 3.4.25.1 Proteasome subunit beta type-7 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.029471288999999998 2 LEVO MNHDPFSWGRPADSTYGAYNTQIANAGASPMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGD NTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFL RYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLT FKKNLQVENMKWDFAKDIKGYGTQKI P30657 3.4.25.1 26S protease regulatory subunit 7 homolog Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.052054891 1 LEVO MPPKEDWEKYKAPLEDDDKKPDDDKIVPLTEGDIQVLKSYGAAPYAAKLKQTENDLKDIEARIKEKAGVKESDTGLAPSH LWDIMGDRQRLGEEHPLQVARCTKIIKGNGESDETTTDNNNSGNSNSNSNQQSTDADEDDEDAKYVINLKQIAKFVVGLG ERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFD DGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER GIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN P33299 26S protease regulatory subunit 4 homolog Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.04889816 1 LEVO MGQGVSSGQDKKKKKGSNQKPKYEPPVQSKFGRKKRKGGPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEEEFVSNSE ILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVL QDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAG LLALRERRMQVTAEDFKQAKERVMKNKVEENLEGLYL P40327 26S protease regulatory subunit 6B homolog Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.047953676 1 LEVO MEELGIVTPVEKAVEEKPAVKSYASLLAQLNGTVNNNSALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELK RAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISV MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR ADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY VILQSDLEEAYATQVKTDNTVDKFDFYK P33298 26S protease subunit RPT4 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.049480137 1 LEVO MSEEQDPLLAGLGETSGDNHTQQSHEQQPEQPQETEEHHEEEPSRVDPEQEAHNKALNQFKRKLLEHRRYDDQLKQRRQN IRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILP RETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG ANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGF FAIRDDRDHINPDDLMKAVRKVAEVKKLEGTIEYQKL P53549 26S protease regulatory subunit 6A Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.048315726999999996 1 LEVO MATLEELDAQTLPGDDELDQEILNLSTQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVA NVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLP SEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN ATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGM IALRNGQSSVKHEDFVEGISEVQARKSKSVSFYA P33297 26S protease regulatory subunit 8 homolog Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 0.045342742 1 LEVO MTAAVTSSNIVLETHESGIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVS DKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEI KEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREH APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPS VAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQETAISV AKLFK Q01939 MAGNESIUM ION 2.4305e-05 6 MG ADENOSINE-5'-TRIPHOSPHATE 0.000507181 5 ATP ADENOSINE-5'-DIPHOSPHATE 0.000427201 1 ADP singleParticle particle 1 7.4 COPPER 400 GLOW DISCHARGE 15 ETHANE-PROPANE 95 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.5 3.5 FEI TITAN KRIOS AUTOGRID HOLDER GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 10.0 45.0 1 4CR3 C1 4.5 FSC 0.143 CUT-OFF RELION 1.4 193337 PROJECTION MATCHING RELION 1.4 PROJECTION MATCHING RELION 1.4 emd_3535.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 529.92 529.92 529.92 90.0 90.0 90.0 X Y Z -0.092161775 0.1307914 -0.0000060000098 0.004646115 1.38 1.38 1.38 0.017 AUTHOR ::::EMDATABANK.org::::EMD-3535::::