2024-12-04 REL PDBj PDBj PDBj 2023-02-10 2024-09-18 2024-09-18 2024-12-04 National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK) RO1 DK081418 United States National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK) RO1 DK089883 United States Respiratory complex Membrane domain of CI, focus-refined of type II, Wild type mouse under cold temperature Shin Y-C Liao M Respiratory complex, Respiratory supercomplex, ELECTRON TRANSPORT Shin YC Latorre-Muro P Djurabekova A Zdorevskyi O Bennett CF Burger N Song K Xu C Paulo JA Gygi SP Sharma V Liao M Puigserver P Structural basis of respiratory complex adaptation to cold temperatures. Cell 187 6584 2024 39395414 doi:10.1016/j.cell.2024.09.029 1097-4172 8ibf FULLOVERLAP Respiratory Supercomplex CI:CIII2 Respiratory Supercomplex CI:CIII2 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 Mus musculus 1.32 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial Mus musculus 0.052693559 1 LEVO MAALRALRCLRGVGAPVLRPGSGIRLPSQPSRGARQWQPDIEWAEQFSGAVMYPSKETAHWKPPPWNDVDILKEKAVTNM TLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSIAVEKLLN IQPPPRAQWIRVLFGEITRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL LDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPI GSRGDCYDRYLCRVEEMRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAI EAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR Q91WD5 7.1.1.2 NADH-ubiquinone oxidoreductase chain 6 Mus musculus 0.018571039 1 LEVO MNNYIFVLSSLFLVGCLGLALKPSPIYGGLGLIVSGFVGCLMVLGFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE TWGSNWLILGFLVLGVIMEVFLICVLNYYDEVGVILGDGLGDWLMYEVDDVGVMLEGGIGVAAMYSCATWMMVVAGWSLF AGIFIIIEITRD P03925 7.1.1.2 NADH-ubiquinone oxidoreductase chain 4L Mus musculus 0.010609619 1 LEVO MPSTFFNLTMAFSLSLLGTLMFRSHLMSTLLCLEGMVLSLFIMTSVTSLNSNSMSSMPIPITILVFAACEAAVGLALLVK VSNTYGTDYVQNLNLLQC P03903 7.1.1.2 NADH-ubiquinone oxidoreductase chain 5 Mus musculus 0.068519289 1 LEVO MNIFTTSILLIFILLLSPILISMSNLIKHINFPLYTTTSIKFSFIISLLPLLMFFHNNMEYMITTWHWVTMNSMELKMSF KTDFFSILFTSVALFVTWSIMQFSSWYMHSDPNINRFIKYLTLFLITMLILTSANNMFQLFIGWEGVGIMSFLLIGWWYG RTDANTAALQAILYNRIGDIGFILAMVWFSLNMNSWELQQIMFSNNNDNLIPLMGLLIAATGKSAQFGLHPWLPSAMEGP TPVSALLHSSTMVVAGIFLLVRFHPLTTNNNFILTTMLCLGALTTLFTAICALTQNDIKKIIAFSTSSQLGLMMVTLGMN QPHLAFLHICTHAFFKAMLFMCSGSIIHSLADEQDIRKMGNITKIMPFTSSCLVIGSLALTGMPFLTGFYSKDLIIEAIN TCNTNAWALLITLIATSMTAMYSMRIIYFVTMTKPRFPPLISINENDPDLMNPIKRLAFGSIFAGFVISYNIPPTSIPVL TMPWFLKTTALIISVLGFLIALELNNLTMKLSMNKANPYSSFSTLLGFFPSIIHRITPMKSLNLSLKTSLTLLDLIWLEK TIPKSTSTLHTNMTTLTTNQKGLIKLYFMSFLINIILIIILYSINLE P03921 7.1.1.2 NADH-ubiquinone oxidoreductase chain 4 Mus musculus 0.051915535 1 LEVO MLKIILPSLMLLPLTWLSSPKKTWTNVTSYSFLISLTSLTLLWQTDENYKNFSNMFSSDPLSTPLIILTAWLLPLMLMAS QNHLKKDNNVLQKLYISMLISLQILLIMTFSATELIMFYILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPL LIALILIQNHVGTLNLMILSFTTHTLDASWSNNLLWLACMMAFLIKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKLGS YGMIRISIILDPLTKYMAYPFILLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIASIMIQTPWSFMGATMLMIAHG LTSSLLFCLANSNYERIHSRTMIMARGLQMVFPLMATWWLMASLANLALPPSINLMGELFITMSLFSWSNFTIILMGINI IITGMYSMYMIITTQRGKLTNHMINLQPSHTRELTLMALHMIPLILLTTSPKLITGLTM P03911 7.1.1.2 NADH-ubiquinone oxidoreductase chain 2 Mus musculus 0.038772219 1 LEVO MNPITLAIIYFTIFLGPVITMSSTNLMLMWVGLEFSLLAIIPMLINKKNPRSTEAATKYFVTQATASMIILLAIVLNYKQ LGTWMFQQQTNGLILNMTLMALSMKLGLAPFHFWLPEVTQGIPLHMGLILLTWQKIAPLSILIQIYPLLNSTIILMLAIT SIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAILPYNPSLTLLNLMIYIILTAPMFMALMLNNSMTINSISLLWNKTPAM LTMISLMLLSLGGLPPLTGFLPKWIIITELMKNNCLIMATLMAMMALLNLFFYTRLIYSTSLTMFPTNNNSKMMTHQTKT KPNLMFSTLAIMSTMTLPLAPQLIT P03893 7.1.1.2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial Mus musculus 0.040657374999999996 1 LEVO MALRLLRLVPASAPARGLAAGAQRVGRIHTSVHCKLRYGLLAAILGDKTTKKLHEYSRVITVDGNICSGKNKLAKEIAQQ LGMKHYPEAGIQYSSTTTGDGRPLDIEFSGSCSLEKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVLE RSIYSDFVFLEAMYNQGYIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVPEVQSRIQKKGDPHEMKVTSAYLQDIENA YKKTFLPKMSEMCEVLVYDSWEAEDPTKVVEDIEYLKYNKGPWLKQDDWTFHYLRMLVQDKTEVLNYTTIPVYLPEITIG AHQGSRIYNSFRELPGRKYAPGYNAEVGDKWIWLK Q99LC3 Acyl carrier protein, mitochondrial Mus musculus 0.017390289 1 LEVO MASRVLCACVRRLPAAFAPLPRLPTLALARPLSTTLCPEGIRRRPGALQSALALAQVPGTVTHLCRQYSDAPPLTLDGIK DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE Q9CR21 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 Mus musculus 0.020025127 1 LEVO MPGIVELPTLEELKVEEVKVSSAVLKAAAHHYGAQCDKTNKEFMLCRWEEKDPRRCLKEGKLVNGCALNFFRQIKSHCAE PFTEYWTCLDYSNMQLFRHCRQQQAKFDQCVLDKLGWVRPDLGQLSKVTKVKTDRPLPENPYHSRARPEPNPVIEGDLKP AKHGTRFFFWTV Q9DCJ5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 Mus musculus 0.015130415999999999 1 LEVO MAMVKRFFESYHEVPDGTQCHRKTYITTALGGICGIIGSAYSVSLNPADSTLEAVARVGRYTFTAAAIGAMFGLTTCVSA QVREKPDDPLNYFIGGCAGGLTLGARTHSYGTAAMGCVYMGTAAALFKIGKLEGWELFPTPKV G5E814 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial Mus musculus 0.008636023 1 LEVO MAPSVVLRSFSRLLAPARLPSCSSTRSKFYVREPVNAKPNWLAVGLSVGASVFMWIYLIQTHNEDVLEYKRRNGLE Q9CQY9 NADH dehydrogenase [ubiquinone] 1 subunit C2 Mus musculus 0.014185691999999998 1 LEVO MMNGRPGHEPLKFLPDEARSLPPPKLNDPRLVYMGLLGYCTGLMDNMLRMRPVMRAGLHRQLLFVTSFVFAGYFYLKRQN YLYAVKDHDMFGYIKLHPEDFPEKEKKTYAEILEPFHPVR Q9CQ54 NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 Mus musculus 0.012675772 1 LEVO MPFLDIQKKLGISLDRHFMFLSAEQPYKNAARCHAFEKEWIECAHGIGGTRAKKECKIEFDDFEECLLRYKTMRRMHDIK KQREKLMKEGKYTPPPHHSGREEPRP Q99LY9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 Mus musculus 0.006965109 1 LEVO MTLFQLLREHWVHILVPAGFVFGCYLDRKDDEKLTAFRNKSMLFQRELRPNEEVTWK P0DN34 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial Mus musculus 0.017463727 1 LEVO MAARLLSLYGRCLSAAGAMRGLPAARVRWESSRAVIAPSGVEKKRQREPTMQWQEDPEPEDENVYAKNPDFHGYDSDPVV DVWNMRAVFFFGFSIVLVFGTTFVAYVPDYRMQEWARREAERLVKYREVNGLPIMESNYFDPSKIQLPEDD O09111 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial Mus musculus 0.021742196999999998 1 LEVO MAAMSLLQRASVSALTALSCRRAGPRLGVGSFLTRSFPKTVAPVRHSGDHGKRLFVVKPSLYYDARFLRLMKFYLMLTGI PVIIGITLVNIFIGEAELAEIPEGYIPEHWEYYKHPISRWIARNFYDGPEKNYEKTLAILQIESEKAELRLKEQEVRRLM RARGDGPWYQFPTPEKEFIDHSPKATPDN Q9CQH3 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 Mus musculus 0.015540084999999999 1 LEVO MSGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPRRMWPLERFWDNFLRDGAVWKNMVFKAYRSSLFAVSHVLIPMW FVHYYVKYHMATKPYTIVSSKPRIFPGDTILETGEVIPPMRDFPDQHH Q3UIU2 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial Mus musculus 0.011982436999999999 1 LEVO MSALTRLVPFGRVGGRLLRGCRARAAGDSGVRHAGGGVHIQPRYREFPQLTRSQVIQGEFLSSLMWFWILWRFWHDSDAV LGHFSYPDPSQWTDEELGIPPDDED Q9CPU2 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 Mus musculus 0.011714239999999999 1 LEVO MAAGHGHEHGHEHGHGHGKMELPDYRQWKIEGTPLETVQKKLAARGLRDPWARNEAWRYMGGFAGNITFPSVILKGFKWG FAAFVVALGAEYFLDSQNGDKKHH Q9CQZ6 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial Mus musculus 0.021903828 1 LEVO MAAARAAALGVRWLQRTTRGVVPLEARRAFHMTKDMLPGSYPRTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPMLPN RSQHERDPWYQWDHSELRMNWGEPIHWDLDMYIRNRVDTSPTPVSWDVMCKHLFGFVAFMVFMFWVGHVFPSYQPVGPKQ YPYNNLYLERGGDPTKEPEPVVHYDI Q9D6J5 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 Mus musculus 0.015105287 1 LEVO MSGSKYKPAPLATLPSTLDPAEYDVSPETRRAQVERLSIRARLKREYLLQYNDPKRVSHIEDPALIRWTYARSANIYPNF RPTPKNSLLGAVAGFGPLIFWYYVFKTDRDRKERLIQEGKLDRKFNISY Q9CQC7 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 Mus musculus 0.022020123 1 LEVO MAFCAPPAYLTHQQKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKDMMRATQLLREAEEEFWQNQHPQPY IFPDSPGGTSFERYECYKVPEWCLDYWHPSEKAMYPDYFSKREQWKKLRMESWDREVKQLQEETSPDGIMTEALPPARRE GDLPPLWWHIVTRPRERPT Q9CQJ8 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 Mus musculus 0.016360804 1 LEVO MGAHLTRRYLWDASVEPDPEKIPSFPPDLGFPERKERVMVATQQEMMDAQLTLQQRDYCAHYLIRLLKCKRDSFPNFLAC KHEQHDWDYCEHLDYVKRMKEFERERRLLQRKKRRALKEARVAQGQGEGEVGPEVAL Q9CR61 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 Mus musculus 0.021054832 1 LEVO MPDSWDKDVYPEPPSRTPAPSPQTSLPNPITYLTKAYDLVVDWPVTLVREFIERQHAKNRTYYYHRQYRRVPDITECKEG DVLCIYEAEMQWRRDFKVDQEIMNIIQERLKACQQREGENYQQNCAKELEQFTKVTKAYQDRYLDLGAYYSARKCLAKQK QRMLEERKAARQEAAA Q9DCS9 1,2-Distearoyl-sn-glycerophosphoethanolamine 0.000748065 14 3PE CARDIOLIPIN 0.0014640429999999997 3 CDL ADENOSINE-5'-DIPHOSPHATE 0.000427201 1 ADP ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate 0.000584703 1 EHZ singleParticle particle 0.33 8.0 ETHANE FEI TALOS ARCTICA OTHER OTHER FIELD EMISSION GUN 200 1.0 2.2 GATAN K3 (6k x 4k) 46.1 GATAN K3 (6k x 4k) 45.9 1 7AK5 3.3 FSC 0.143 CUT-OFF 177076 ANGULAR RECONSTITUTION ANGULAR RECONSTITUTION emd_35342.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 422.40002 422.40002 422.40002 90.0 90.0 90.0 X Y Z -1.8947393 3.0501769 0.0008178811 0.08525267 1.1 1.1 1.1 0.55 AUTHOR Focus-refined map, Membrane Domain, Cold Acclimated, Type II of Respiratory Supercomplex emd_35342_msk_1.map emd_35342_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 422.40002 422.40002 422.40002 90.0 90.0 90.0 X Y Z -0.63564086 1.3743932 0.00221668 0.07369831 1.1 1.1 1.1 AUTHOR Half map B of Focus-refined map, Membrane Domain, Cold Acclimated, Type II of Respiratory Supercomplex emd_35342_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 422.40002 422.40002 422.40002 90.0 90.0 90.0 X Y Z -0.5772077 1.2983966 0.002196569 0.0736907 1.1 1.1 1.1 AUTHOR Half map A of Focus-refined map, Membrane Domain, Cold Acclimated, Type II of Respiratory Supercomplex