2024-05-08 REL PDBj PDBj PDBj 2023-02-07 2023-12-20 2023-12-20 2024-05-08 National Research Foundation (NRF, Korea) Korea, Republic Of The focused refinement of CCT4-PhLP2A from TRiC-PhLP2A complex in the open state Roh SH Park J Kim H Lim S chaperonin complex, CHAPERONE, cochaperone Park J Kim H Gestaut D Lim S Opoku-Nsiah KA Leitner A Frydman J Roh SH A structural vista of phosducin-like PhLP2A-chaperonin TRiC cooperation during the ATP-driven folding cycle. Nat Commun UK 15 1007 1007 2024 38307855 doi:10.1038/s41467-024-45242-x 2041-1723 EMD-35199 other EM volume
CCT3-PhLP2A
 EMD-35122 other EM volume
closed TRiC-PhLP2A
 EMD-35284 other EM volume
open TRiC-PhLP2A
 EMD-35335 other EM volume
closed TRiC-PhLP2A-actin
 8i9q FULLOVERLAP Complex of human TRiC/CCT-PhLP2A Complex of human TRiC/CCT-PhLP2A 0 1 2 1 T-complex protein 1 subunit delta from human TRiC/CCT complex 1 1 Homo sapiens PhLP2A (PDCL3) 1 2 Homo sapiens T-complex protein 1 subunit delta Homo sapiens 0.057996112999999995 1 Trichoplusia ni LEVO MPENVAPRSGATAGAAGGRGKGAYQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQ MQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDR ETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVSNSGITR VEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKM KIMVIKDIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCASPGKTVTIVVRGSNKLVIEE AERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTEL RNRHAQGEKTAGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNTR P50991 Phosducin-like protein 3 Homo sapiens 0.027650383 1 Escherichia coli LEVO MQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEMYRRRRLA EWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGLARKFPDVKFIKAISTTCIPNYPD RNLPTIFVYLEGDIKAQFIGPLVFGGMNLTRDELEWKLSESGAIMTDLEENPKKPIEDVLLSSVRRSVLMKRDSDSEGD Q9H2J4 singleParticle twoDArray 7.4 50.0 NaCl sodium chloride 1.0 C4H10O2S2 DTT Quantifoil R1.2/1.3 COPPER CARBON HOLEY ETHANE 100 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.0 2.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON IV (4k x 4k) COUNTING 4096 4096 15075 50.0 1 2691733
The initial particle selection after 2D class classification
 6NRA
The model of TRiC/CCT complex from the previous study
 4.22 FSC 0.143 CUT-OFF cryoSPARC 3.2.0 485964 MAXIMUM LIKELIHOOD cryoSPARC 3.2.0 MAXIMUM LIKELIHOOD cryoSPARC 3.2.0 5 500000.0 cryoSPARC 3.2.0
The final 3D classification
 emd_35280.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 361.6 361.6 361.6 90.0 90.0 90.0 X Y Z -4.2455406 6.842855 0.0032142631 0.059223834 1.13 1.13 1.13 0.616 AUTHOR A focused refined map of CCT4-PhLP2A 6NR8 PDB experimental model FLEXIBLE FIT REAL emd_35280_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 361.6 361.6 361.6 90.0 90.0 90.0 X Y Z -1.7857604 2.880593 0.0032593112 0.056802057 1.13 1.13 1.13 AUTHOR A focused refined half map of CCT4-PhLP2A emd_35280_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 361.6 361.6 361.6 90.0 90.0 90.0 X Y Z -1.730883 3.1669781 0.0032827118 0.056820866 1.13 1.13 1.13 AUTHOR A focused refined half map of CCT4-PhLP2A