2024-11-20
REL
PDBe
PDBe
PDBe
2016-11-20
2016-12-28
2016-12-28
2024-11-20
Baden-Wurttemberg Stiftung
Meth-P-LS-4
Germany
French National Research Agency
ANR- 09-JCJC-0044
France
Biotechnology and Biological Sciences Research Council
BB/P000940/1
United Kingdom
cryoEM structure of bacterial holo-translocon
Schaffitzel C
Botte M
Karuppasamy M
Papai G
Schultz P
holotranslocon, membrane protein insertion machinery, chaperone, protein secretion
Botte M
Zaccai NR
Nijeholt JL
Martin R
Knoops K
Papai G
Zou J
Deniaud A
Karuppasamy M
Jiang Q
Roy AS
Schulten K
Schultz P
Rappsilber J
Zaccai G
Berger I
Collinson I
Schaffitzel C
A central cavity within the holo-translocon suggests a mechanism for membrane protein insertion.
Sci Rep
UK
6
38399
38399
2016
27924919
doi:10.1038/srep38399
2045-2322
5mg3
FULLOVERLAP
bacterial holo-translocon (HTL)
bacterial holo-translocon (HTL)
0
1
2
3
4
5
6
Membrane Protein Complex consisting of SecYEG-SecDFYajC-YidC
Escherichia coli
0.25
Protein translocase subunit SecY
Escherichia coli
0.050410523
1
Escherichia coli
LEVO
VWNCERITISHRKQTMAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTIIEMFN
MFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGM
QGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAV
LVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTT
ISLYLQPGQPLYVLLYASAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFIC
LIPEFMRDAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKANLKGYGR
P0AGA2
Protein translocase subunit SecE
Escherichia coli
0.015248021
1
Escherichia coli
LEVO
MHHHHHHDDDDKAMGANTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLRALAVVILIAAAGGVALLTTKGKA
TVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGLRF
P0AG96
Protein-export membrane protein SecG
Escherichia coli
0.014326448
1
Escherichia coli
LEVO
VGTGWYSGSPGILYHWPEVLRIQELIMYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTR
MTALLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPAKPTSDIPN
P0AG99
Protein translocase subunit SecD
Escherichia coli
0.06768798399999999
1
Escherichia coli
LEVO
MHHHHHHMLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEEKITAKSVALEEGA
ILARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTVLGKLQEQNIDS
LRSDLREKGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDARLSEAREYAVQQNINI
LRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPV
VLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVI
NIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK
KFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSI
FDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI
P0AG90
Protein translocase subunit SecF
Escherichia coli
0.03541325
1
Escherichia coli
LEVO
MAQEYTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAGF
EEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVY
VGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVS
LTQTLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPS
ILP
P0AG93
Membrane protein insertase YidC
Escherichia coli
0.062658582
1
Escherichia coli
LEVO
MDPSSRDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKLISVKTDVLDLTINTR
GGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTD
AAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPDAAYAAYAF
DTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQD
KMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRE
RLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTM
FFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKSHHHHHH
P25714
singleParticle
particle
8.0
ETHANE
100
5
FEI VITROBOT MARK IV
FEI POLARA 300
FLOOD BEAM
BRIGHT FIELD
FIELD EMISSION GUN
100
FEI FALCON I (4k x 4k)
10.0
1
84732
C1
14.0
FSC 0.143 CUT-OFF
RELION
53648
PROJECTION MATCHING
SPIDER
PROJECTION MATCHING
SPIDER