2026-08-12 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY em_admin pdbx_entry_details pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_struct_conn_angle pdbx_validate_close_contact struct_conn struct_conn_type _em_admin.last_update _pdbx_entry_details.has_protein_modification PDBj PDBj 2022-12-20 2023-05-03 2023-05-03 2026-08-12 Japan Society for the Promotion of Science (JSPS) JP17K15082 Japan Japan Society for the Promotion of Science (JSPS) JP20H05690 Japan Murayama Y Ehara H Sekine S Transcription elongation complex, Transcription termination, TRANSCRIPTION Murayama Y Ehara H Aoki M Goto M Yokoyama T Sekine SI Sci Adv US 9 eade7093 eade7093 2023 36753546 doi:10.1126/sciadv.ade7093 2375-2548 EMD-34996 other EM volume EMD-34997 other EM volume EMD-34999 other EM volume EMD-35000 other EM volume 8hsr FULLOVERLAP PDB 8HSG unspecified PDB 8HSH unspecified PDB 8HSJ unspecified PDB 8HSL unspecified EMDB EMD-34996 other EM volume EMDB EMD-34997 other EM volume EMDB EMD-34999 other EM volume EMDB EMD-35000 other EM volume EMDB EMD-35004 associated EM volume

Thermus thermophilus Rho-engaged RNAP elongation complex

Rho-engaged RNA polymerase elongation complex Rho-engaged RNA polymerase elongation complex 0 1 2 3 4 5 6 7 8 Thermus thermophilus HB8 Transcription termination factor Rho Thermus thermophilus HB8 0.047996269999999994 6 Escherichia coli BL21(DE3) LEVO GPMRRKETLQETPLTYQELASKILPELHLLAQEAGIEGYKRMKKDQLIMALLERQTQGEGLRLVKGYLEISQDGYGFLTE NLHNLESRVAIVSAGLIKQYALRAGDYVVGQARPPRENERYATLLKVEAVNNLDPEAAKNRPRFDELTPQFPDRQIRLET TPDELSTRVIDLLAPIGRGQRGLIVAPPKAGKTTLLKKIANAVLKNEPDIKVIVLLIDERPEEVTDFRESVQGAEVIAST FDEPPQNHIRVAEFVHERAKRIVEEGGHVMILLDSITRLARANNLVTPPTGRTLSGGLDSAALYFPKRFLGAARNIRGGG SLTILATALVETGSRMDDVIFEEFKGTGNMELHLSRRLEERRIFPAIDILKSGTRREELLLGEEVTHKMWLLRKVLADMD PAEAMEMLLARLARTKNNKEFLASLAAR Q5SJE9 DNA-directed RNA polymerase subunit alpha Thermus thermophilus HB8 0.035056163999999994 2 Escherichia coli BL21(DE3) LEVO MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIIL NLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKD RINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQAAAVAAPEEAK EPEAPPEQEEELDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKKGFTLKE Q5SHR6 2.7.7.6 DNA-directed RNA polymerase subunit beta Thermus thermophilus HB8 0.12543653899999999 1 Escherichia coli BL21(DE3) LEVO MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPFPQ DECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIA SIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFT LLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGH EVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNP LSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVT DEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALM GSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQR PRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPE RITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIV VRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRM NLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPE EQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWAL EAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR Q8RQE9 2.7.7.6 DNA-directed RNA polymerase subunit beta' Thermus thermophilus HB8 0.171994391 1 Escherichia coli BL21(DE3) LEVO MKKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEV TKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRE LRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGE ILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAA QVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARV YPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEE MKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQ GAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLH QCGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVL VEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKK GAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRI LFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEK KQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCG LRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISV PLFQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGV CQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEARRPKAKAVISEIDGV VRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQG VKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASF QNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARKEAVEAKERPAARRGVKREQP GKQADYKDDDDK Q8RQE8 2.7.7.6 DNA-directed RNA polymerase subunit omega Thermus thermophilus HB8 0.011533316 1 Escherichia coli BL21(DE3) LEVO MAEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAVTWAMKELLTGRLVFGENLV PEDRLQKEMERLYPVEREE Q8RQE7 2.7.7.6 DNA (41-MER) synthetic construct 0.057785004 1 (DG)(DA)(DA)(DC)(DG)(DC)(DA)(DT)(DT)(DA)(DC)(DC)(DA)(DG)(DA)(DG)(DA)(DA)(DT)(DT) (DC)(DA)(DC)(DG)(DG)(DG)(DA)(DA)(DA)(DG)(DT)(DC)(DG)(DA)(DC)(DA)(DG)(DG)(DG)(DA) (DT)(DC)(DG)(DG)(DT)(DG)(DC)(DA)(DC)(DT)(DA)(DC)(DC)(DA)(DC)(DA)(DA)(DG)(DC)(DA) (DC)(DC)(DC)(DA)(DG)(DG)(DT)(DG)(DG)(DA)(DT)(DG)(DT)(DG)(DG)(DA)(DG)(DA)(DT)(DA) (DT)(DG)(DG)(DT)(DT)(DA)(DT)(DG)(DG)(DG)(DT)(DA)(DA)(DG)(DA)(DT)(DA)(DG)(DA)(DT) (DG)(DG)(DT)(DG)(DA)(DG)(DG)(DT)(DG)(DA)(DT)(DG)(DA)(DG)(DT)(DT)(DT)(DA)(DA)(DA) (DG)(DG)(DA)(DG)(DT)(DG)(DA)(DA)(DG)(DT)(DA)(DT)(DG)(DG)(DA)(DG)(DT)(DG)(DA)(DA) (DG)(DA)(DG)(DA)(DG)(DA)(DT)(DG)(DG)(DG)(DT)(DA)(DG)(DA)(DT)(DA)(DG)(DT)(DA)(DG) (DT)(DT)(DG)(DA)(DG)(DT)(DA)(DG)(DG)(DG)(DA)(DG)(DT)(DG)(DA)(DA)(DG)(DT)(DC)(DC) (DT)(DG)(DC)(DA) DNA RNA (29-MER) synthetic construct 0.039054003999999996 1 AAUUUGCAGGACUUCACUCCCUACUCAACUACUAUCUACCCAUCUCUCUUCACUCCAUACUUCACUCCUUUAAACUCAUC ACCUCACCAUCUAUCUUACCCAUAACCAUAUCUCCACAUCCACCU DNA (31-MER) synthetic construct 0.054576796999999996 1 (DG)(DG)(DA)(DC)(DT)(DT)(DC)(DA)(DC)(DT)(DC)(DC)(DC)(DT)(DA)(DC)(DT)(DC)(DA)(DA) (DC)(DT)(DA)(DC)(DT)(DA)(DT)(DC)(DT)(DA)(DC)(DC)(DC)(DA)(DT)(DC)(DT)(DC)(DT)(DC) (DT)(DT)(DC)(DA)(DC)(DT)(DC)(DC)(DA)(DT)(DA)(DC)(DT)(DT)(DC)(DA)(DC)(DT)(DC)(DC) (DT)(DT)(DT)(DA)(DA)(DA)(DC)(DT)(DC)(DA)(DT)(DC)(DA)(DC)(DC)(DT)(DC)(DA)(DC)(DC) (DA)(DT)(DC)(DT)(DA)(DT)(DC)(DT)(DT)(DA)(DC)(DC)(DC)(DA)(DT)(DA)(DA)(DC)(DC)(DA) (DT)(DA)(DT)(DC)(DT)(DC)(DC)(DA)(DC)(DA)(DT)(DC)(DC)(DA)(DC)(DC)(DT)(DG)(DG)(DG) (DT)(DG)(DC)(DT)(DT)(DG)(DT)(DG)(DG)(DT)(DA)(DG)(DT)(DG)(DC)(DA)(DC)(DC)(DG)(DA) (DT)(DC)(DC)(DC)(DT)(DG)(DT)(DC)(DG)(DA)(DC)(DT)(DT)(DT)(DC)(DC)(DC)(DG)(DT)(DG) (DA)(DA)(DT)(DT)(DC)(DT)(DC)(DT)(DG)(DG)(DT)(DA)(DA)(DT)(DG)(DC)(DG)(DT)(DT)(DC) DNA ADENOSINE-5'-DIPHOSPHATE 0.000427201 6 ADP MAGNESIUM ION 2.4305e-05 7 MG BERYLLIUM TRIFLUORIDE ION 6.600700000000001e-05 6 BEF ZINC ION 6.5409e-05 2 ZN singleParticle particle 7.5 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.2 2.0 GATAN K3 BIOQUANTUM (6k x 4k) 50.0 1 NONE 2O5I 4.0 FSC 0.143 CUT-OFF 43245 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD