2024-10-30 REL PDBj PDBj PDBj 2022-12-13 2023-10-18 2023-10-18 2024-10-30 Department of Biotechnology (DBT, India) BT/PR29041/BRB/10/1697/20 India Structure of a GPCR-G protein in complex with a natural peptide agonist Saha S Maharana J Yadav MK Sarma P Chami M Banerjee R Shukla AK GPCR, G protein, SIGNALING PROTEIN, SIGNALING PROTEIN-IMMUNE SYSTEM complex Yadav MK Maharana J Yadav R Saha S Sarma P Soni C Singh V Saha S Ganguly M Li XX Mohapatra S Mishra S Khant HA Chami M Woodruff TM Banerjee R Shukla AK Gati C Molecular basis of anaphylatoxin binding, activation, and signaling bias at complement receptors. Cell 186 4956 4973.e21 2023 37852260 doi:10.1016/j.cell.2023.09.020 1097-4172 Saha S Maharana J Yadav MK Sarma P Chami M Banerjee R Shukla AK Structure of a GPCR-G protein in complex with a synthetic peptide agonist Cell(Cambridge,Mass.) US 2023 doi:https://doi.org/10.1016/j.cell.2023.09.020 0092-8674 0998 CELLB5 8hqc FULLOVERLAP GPCR-G protein in complex with a natural peptide agonist GPCR-G protein in complex with a natural peptide agonist 0 1 2 3 4 5 6 C5a anaphylatoxin chemotactic receptor 1 1 1 Mus musculus Guanine nucleotide-binding protein G(o) subunit alpha 1 2
This is a variant of Guanine nucleotide-binding protein G(o) subunit alpha called the "mini G(o) alpha"
Homo sapiens Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 1 3 Homo sapiens C5a anaphylatoxin 1 4 Homo sapiens Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 1 5 Homo sapiens Antibody fragment 1 6 Mus musculus C5a anaphylatoxin chemotactic receptor 1 Mus musculus 0.044958422
The initial sequence in the sample sequence is the expression tag (absent in the coordinates): "MGKTIIALSYIFCLVFADYKDDDDAANFTPVNGSSGNQSVRLVTSSSLEVLFQGPGSDPIDNSSFEINYDHYGTMDPNI" The residues absent in the coordinates and present in the sample sequence belongs to disordered regions.
1 Spodoptera frugiperda LEVO MGKTIIALSYIFCLVFADYKDDDDAANFTPVNGSSGNQSVRLVTSSSLEVLFQGPGSDPIDNSSFEINYDHYGTMDPNIP ADGIHLPKRQPGDVAALIIYSVVFLVGVPGNALVVWVTAFEARRAVNAIWFLNLAVADLLSCLALPVLFTTVLNHNYWYF DATACIVLPSLILLNMYASILLLATISADRFLLVFKPIWCQKVRGTGLAWMACGVAWVLALLLTIPSFVYREAYKDFYSE HTVCGINYGGGSFPKEKAVAILRLMVGFVLPLLTLNICYTFLLLRTWSRKATRSTKTLKVVMAVVICFFIFWLPYQVTGV MIAWLPPSSPTLKRVEKLNSLCVSLAYINCCVNPIIYVMAGQGFHGRLLRSLPSIIRNALSEDSVGRDSKTFTPSTTDTS TRKSQAV P30993 Guanine nucleotide-binding protein G(o) subunit alpha Homo sapiens 0.027024761999999997
This is a variant of Guanine nucleotide-binding protein G(o) subunit alpha called the "mini G(o) alpha";Expression tag: "MGHHHHHHENLYFQGT" Residues absent in the coordinates: Disordered regions,This is a variant of Guanine nucleotide-binding protein G(o) subunit alpha called the "mini G(o) alpha";Expression tag: "MGHHHHHHENLYFQGT" Residues absent in the coordinates: Disordered regions
1 Escherichia coli LEVO MGHHHHHHENLYFQGTLSAEERAALERSKAIEKNLKEDGISAAKDVKLLLLGADNSGKSTIVKQMKIIHGGSGGSGGTTG IVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVDLSDYNRMHESLMLFDSICNNKFFIDTSIILFLNKKDL FGEKIKKSPLTICFPEYTGPNTYEDAAAYIQAQFESKNRSPNKEIYCHMTCATDTNNAQVIFDAVTDIIIANNLRGCGLY P09471 P09471 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 Homo sapiens 0.038534061999999994
Expression tag: "MHHHHHHGSSGS"
1 Spodoptera frugiperda LEVO MHHHHHHGSSGSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLL VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG HDNRVSCLGVTDDGMAVATGSWDSFLKIWN P62873 C5a anaphylatoxin Homo sapiens 0.008288675999999998 1 Escherichia coli LEVO TLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDMQLGR P01031 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 Homo sapiens 0.007861143
Residues absent in the coordinates: Disordered regions
1 Spodoptera frugiperda LEVO MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFFCAIL P59768 Antibody fragment Mus musculus 0.027340482
Residues absent in the coordinate file: Disordered regions
1 Escherichia coli LEVO DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLF LQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCR SSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFG AGTKLELKGSLEVLFQ singleParticle particle 7.4 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.5 2.5 GATAN K2 SUMMIT (4k x 4k) COUNTING 42.0 1 8HPT 3.89 FSC 0.143 CUT-OFF cryoSPARC 3.3.2 173416 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD cryoSPARC 3.3.2 emd_34947.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 341.1216 341.1216 341.1216 90.0 90.0 90.0 X Y Z -0.95278513 1.3577551 0.0003413784 0.018877408 0.94756 0.94756 0.94756 0.09 AUTHOR Full map corresponding to C5a-C5aR1-Go FLEXIBLE FIT REAL emd_34947_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 341.1216 341.1216 341.1216 90.0 90.0 90.0 X Y Z -0.26399368 0.47509757 0.00044527763 0.019573666 0.94756 0.94756 0.94756 AUTHOR Half map A corresponding to C5a-C5aR1-Go emd_34947_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 341.1216 341.1216 341.1216 90.0 90.0 90.0 X Y Z -0.24571674 0.4524796 0.00045082835 0.019582568 0.94756 0.94756 0.94756 AUTHOR Half map B corresponding to C5a-C5aR1-Go