Human ATP synthase state 2 (combined)

2025-07-02 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name DATABASE_REFERENCES citation _citation.journal_volume _citation.page_first DATA_COLLECTION chem_comp_atom chem_comp_bond em_admin _em_admin.last_update STRUCTURE_SUMMARY em_admin em_software pdbx_entry_details _em_admin.last_update _em_software.name _pdbx_entry_details.has_protein_modification PDBj PDBj 2022-10-25 2023-05-31 2023-05-31 2025-07-02 National Natural Science Foundation of China (NSFC) 81520108019 China National Natural Science Foundation of China (NSFC) 813300237 China National Natural Science Foundation of China (NSFC) 32100976 China National Natural Science Foundation of China (NSFC) 82222042 China Human ATP synthase state 2 (combined) Lai Y Zhang Y Liu F Gao Y Gong H Rao Z MEMBRANE PROTEIN Lai Y Zhang Y Zhou S Xu J Du Z Feng Z Yu L Zhao Z Wang W Tang Y Yang X Guddat LW Liu F Gao Y Rao Z Gong H Structure of the human ATP synthase. Mol.Cell US 83 2137 2023 37244256 doi:10.1016/j.molcel.2023.04.029 1097-2765 2168 MOCEFL EMD-34568 other EM volume

Human ATP synthase state 2 F1 domain

EMD-34571 other EM volume

Human ATP synthase state 2 subregion 1

EMD-34570 other EM volume

Human ATP synthase state 2 subregion 2

EMD-34569 other EM volume

Human ATP synthase state2 subregion 3

8h9t FULLOVERLAP Human ATP synthase Human ATP synthase 0 1 2 3 4 Homo sapiens 0.6 ATP synthase F(0) complex subunit B1, mitochondrial Homo sapiens 0.024658586 1 LEVO PVPPLPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFVAD FADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLYRVYKEVKNRLDYHIS VQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCIADLKLLAKKAQAQPVM P24539 ATP synthase-coupling factor 6, mitochondrial Homo sapiens 0.012606498999999998 1 LEVO MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLKQ MFGNADMNTFPTFKFEDPKFEVIEKPQA P18859 ATP synthase subunit d, mitochondrial Homo sapiens 0.018383982 1 LEVO AGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPV PEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL O75947 ATP synthase F(0) complex subunit C1, mitochondrial Homo sapiens 0.007610954 8 LEVO DIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM P05496 ATP synthase subunit delta, mitochondrial Homo sapiens 0.015029817 1 LEVO AEAAAAPAAASGPNQMSFTFASPTQVFFNGANVRQVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSG SIAVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKALE P30049 ATP synthase subunit epsilon, mitochondrial Homo sapiens 0.005790779 1 LEVO MVAYWRQAGLSYIRYSQICAKAVRDALKTEFKANAEKTSGSNVKIVKVKKE P56381 ATP synthase subunit a Homo sapiens 0.024833102 1 LEVO MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMTMHNTKGRTWSLMLVSLIIFIA TTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVIMGFRSKIKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRL TANITAGHLLMHLIGSATLAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT P00846 ATP synthase subunit ATP5MJ, mitochondrial Homo sapiens 0.006673053 1 LEVO MLQSIIKNIWIPMKPYYTKVYQEIWIGMGLMGFIVYKIRAADKRSKALKASAPAPGHH P56378 ATP synthase subunit f, mitochondrial Homo sapiens 0.010804685999999999 1 LEVO ASVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVLACYVLFSYSFS YKHLKHERLRKYH P56134 ATP synthase subunit g, mitochondrial Homo sapiens 0.011309226 1 LEVO AQFVRNLVEKTPALVNAAVTYSKPRLATFWYYAKVELVPPTPAEIPRAIQSLKKIVNSAQTGSFKQLTVKEAVLNGLVAT EVLMWFYVGEIIGKRGIIGYDV O75964 ATP synthase subunit e, mitochondrial Homo sapiens 0.007947215 1 LEVO MVPPVQVSPLIKLGRYSALFLGVAYGATRYNYLKPRAEEERRIAAEEKKKQDELKRIARELAEDDSILK P56385 ATP synthase protein 8 Homo sapiens 0.008000634 1 LEVO MPQLNTTVWPTMITPMLLTLFLITQLKMLNTNYHLPPSPKPMKMKNYNKPWEPKWTKICSLHSLPPQS P03928 ATP synthase subunit alpha, mitochondrial Homo sapiens 0.05527616 3 LEVO QKTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDK LIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIG RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGSDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAA PLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGS LTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREV AAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVVSQHQALL GTIRADGKISEQSDAKLKEIVTNFLAGFEA P25705 ATP synthase subunit beta, mitochondrial Homo sapiens 0.051821965 3 LEVO AQTSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLD SGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGG AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGL TVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDL TDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELS EEDKLTVSRARKIQRFLSQPFQVAEVFTGHMGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAEEH SS P06576 7.1.2.2 ATP synthase subunit gamma, mitochondrial Homo sapiens 0.030207751999999997 1 LEVO ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGA IHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSI IFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNAS EMIDKLTLTFNRTRQAVITKELIEIISGAAALD P36542 ATP synthase subunit O, mitochondrial Homo sapiens 0.020904488 1 LEVO FAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSP LTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILG GMIVRIGEKYVDMSVKTKIQKLGRAMREIV P48047 ADENOSINE-5'-TRIPHOSPHATE 0.000507181 3 ATP MAGNESIUM ION 2.4305e-05 5 MG ADENOSINE-5'-DIPHOSPHATE 0.000427201 2 ADP singleParticle particle 7.4 Quantifoil R1.2/1.3 CARBON HOLEY ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.2 2.4 NITROGEN TFS Selectris X 10 FEI FALCON IV (4k x 4k) 50.0 1 cryoSPARC PHASE FLIPPING AND AMPLITUDE CORRECTION

AlphaFold

2.77 FSC 0.143 CUT-OFF 37480 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD cryoSPARC emd_34581.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 373.76 373.76 373.76 90.0 90.0 90.0 Z Y X -23.201257999999999 38.102924000000002 0.0085605 1.0747932 0.73 0.73 0.73 4.5 AUTHOR ::::EMDATABANK.org::::EMD-34581::::