<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3454" version="3.0.0.0" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_0/emdb.xsd">
    <admin>
        <current_status>
            <date>2017-08-02</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2016-11-02</deposition>
            <header_release>2016-12-07</header_release>
            <map_release>2017-04-05</map_release>
            <update>2017-08-02</update>
        </key_dates>
        <title>RNA activation-independent DNA targeting by a Csm complex of the Type III CRISPR-Cas system</title>
        <authors_list>
            <author>Jung TY</author>
            <author>Song JJ</author>
            <author>Hebert H</author>
            <author>Woo EJ</author>
            <author>Oh BH</author>
            <author>Park KH</author>
            <author>An Y</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Park KH</author>
                    <author order="2">An Y</author>
                    <author order="3">Jung TY</author>
                    <author order="4">Baek IY</author>
                    <author order="5">Noh H</author>
                    <author order="6">Ahn WC</author>
                    <author order="7">Hebert H</author>
                    <author order="8">Song JJ</author>
                    <author order="9">Kim JH</author>
                    <author order="10">Oh BH</author>
                    <author order="11">Woo EJ</author>
                    <title>RNA activation-independent DNA targeting of the Type III CRISPR-Cas system by a Csm complex.</title>
                    <journal_abbreviation>EMBO Rep.</journal_abbreviation>
                    <country>UK</country>
                    <volume>18</volume>
                    <first_page>826</first_page>
                    <last_page>840</last_page>
                    <year>2017</year>
                    <external_references type="PUBMED">28364023</external_references>
                    <external_references type="DOI">doi:10.15252/embr.201643700</external_references>
                    <external_references type="ISSN">1469-3178</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-3454</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Csm complex with crRNA from T.onnurineus</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Csm complex with crRNA from T.onnurineus</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="523850">Thermococcus onnurineus NA1</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                    <recombinant_plasmid>pRSFDuet-1, pETDuel-1, pACYCDuet-1</recombinant_plasmid>
                </recombinant_expression>
                <molecular_weight>
                    <experimental units="MDa">0.28</experimental>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.025</concentration>
                    <buffer>
                        <ph>8.</ph>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <material>Uranyl acetate</material>
                    </staining>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>JEOL 2100F</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <nominal_cs units="mm">2.0</nominal_cs>
                    <specimen_holder_model>JEOL</specimen_holder_model>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>TVIPS TEMCAM-F415 (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/&#8491;^2">30.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>EMAN</name>
                            <version>2.12</version>
                            <processing_details>e2ctf.py</processing_details>
                        </software>
                    </software_list>
                </ctf_correction>
                <final_reconstruction>
                    <number_classes_used>50</number_classes_used>
                    <resolution res_type="BY AUTHOR" units="&#8491;">25.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>EMAN</name>
                            <version>2.12</version>
                            <processing_details>e2refine_easy.py</processing_details>
                        </software>
                    </software_list>
                    <number_images_used>7644</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing />
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing />
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="19653">
        <file>emd_3454.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>170</col>
            <row>170</row>
            <sec>170</sec>
        </dimensions>
        <origin>
            <col>-85</col>
            <row>-85</row>
            <sec>-85</sec>
        </origin>
        <spacing>
            <x>170</x>
            <y>170</y>
            <z>170</z>
        </spacing>
        <cell>
            <a units="&#8491;">351.9</a>
            <b units="&#8491;">351.9</b>
            <c units="&#8491;">351.9</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.8233378</minimum>
            <maximum>2.4102547</maximum>
            <average>0.007941852</average>
            <std>0.1374122</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">2.07</x>
            <y units="&#8491;">2.07</y>
            <z units="&#8491;">2.07</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.5</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-3454::::</label>
        <annotation_details>Csm complex with crRNA from T.onnurineus</annotation_details>
    </map>
</emd>