<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3443" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2016-07-21</deposition>
         <header_release>2016-09-28</header_release>
         <map_release>2016-09-28</map_release>
         <update>2016-10-12</update>
      </key_dates>
      <title>Electron cryo-microscopy of the yeast RNA polymerase I - Rrn3 complex at 7.5A resolution</title>
      <authors_list>
         <author>Pilsl M</author>
         <author>Crucifix C</author>
         <author>Papai G</author>
         <author>Krupp F</author>
         <author>Steinbauer R</author>
         <author>Griesenbeck J</author>
         <author>Milkereit P</author>
         <author>Tschochner H</author>
         <author>Schultz P</author>
      </authors_list>
      <keywords>RNA polymerase I initiation factor Rrn3 transcription initiation</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Pilsl M</author>
               <author order="2">Crucifix C</author>
               <author order="3">Papai G</author>
               <author order="4">Krupp F</author>
               <author order="5">Steinbauer R</author>
               <author order="6">Griesenbeck J</author>
               <author order="7">Milkereit P</author>
               <author order="8">Tschochner H</author>
               <author order="9">Schultz P</author>
               <title>Structure of the initiation-competent RNA polymerase I and its implication for transcription</title>
               <journal>NAT.COMMUN.</journal>
               <volume>7</volume>
               <first_page>12126</first_page>
               <year>2016</year>
               <external_references type="PUBMED">27418187</external_references>
               <external_references type="DOI">doi:10.1038/ncomms12126</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>complex formed between YEAST RNA polymerase I and the initiation factor Rrn3</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>complex formed between YEAST RNA polymerase I and the initiation factor Rrn3</name>
            <oligomeric_state>1</oligomeric_state>
            <number_unique_components>2</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">663</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name>DNA dependent RNA polymerase I</name>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
               <synonym_organism>bakers yeast</synonym_organism>
               <cellular_location>nucleolar</cellular_location>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.590</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name>Rrn3</name>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
               <synonym_organism>bakers yeast</synonym_organism>
               <cellular_location>nucleolar</cellular_location>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.072346</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.01</concentration>
               <buffer>
                  <ph>7.8</ph>
                  <details>20 mM Hepes, 100mM ammonium acetate and 2mM MgCl2</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>unstained</details>
               </staining>
               <grid>
                  <details>sample was adsorbed on a floated carbon foil which was deposited onto a quantifoil grid</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">95</chamber_humidity>
                  <instrument>FEI VITROBOT MARK IV</instrument>
                  <method>blotting time (4 sec.)
blotting force 5</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>SPOT SCAN</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">0.01</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.5</nominal_defocus_max>
               <nominal_magnification>59000.0</nominal_magnification>
               <calibrated_magnification>129630.0</calibrated_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <temperature>
                  <temperature_min units="K">80</temperature_min>
                  <temperature_max units="K">100</temperature_max>
                  <temperature_average units="K">90</temperature_average>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>Cs corrector</astigmatism>
                  </legacy>
               </alignment_procedure>
               <date>2015-06-10</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">FEI FALCON II (4k x 4k)</film_or_detector_model>
                     <average_electron_dose_per_image units="e/&#8491;^2">22</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>each particle</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">7.5</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>relion</name>
                  </software>
               </software_list>
               <details>final map was calculated from 2 averaged datasets</details>
               <number_images_used>32438</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="8193">
      <file>emd_3443.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>128</col>
         <row>128</row>
         <sec>128</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>128</x>
         <y>128</y>
         <z>128</z>
      </spacing>
      <cell>
         <a units="&#8491;">276.48</a>
         <b units="&#8491;">276.48</b>
         <c units="&#8491;">276.48</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.17636499</minimum>
         <maximum>0.38812745</maximum>
         <average>0.00050278</average>
         <std>0.02722943</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">2.16</x>
         <y units="&#8491;">2.16</y>
         <z units="&#8491;">2.16</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.121</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>reconstruction of the RNA pol I - Rrn3 complex</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3443::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <initial_model>
               <access_code>4C2M</access_code>
            </initial_model>
            <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            <software_list>
               <software>
                  <name>gEMfitter, Chimera</name>
               </software>
            </software_list>
            <refinement_space>REAL</refinement_space>
         </modelling>
      </modelling_list>
   </interpretation>
</emd>