REL PDBe PDBe PDBe 2016-05-11 2016-06-15 2016-07-20 2016-08-24 Structure of the ATPgS-bound VAT complex Huang R Ripstein ZA Augustyniak R Lazniewski M Ginalski K Kay LE Rubinstein JL VAT, proteasome, protein dynamics, unfoldase, conformations Rui H Ripstein ZA Augustyniak R Lazniewski M Ginalski K Kay LE Rubinstein JL Unfolding the mechanism of the AAA+ unfoldase VAT by a combined cryo-EM, solution NMR study PROC.NAT.ACAD.SCI.USA 113 e4190 e4199 2016 27402735 doi:10.1073/pnas.1603980113 5g4g FULLOVERLAP VAT (CDC48 homologue) VAT (CDC48 homologue) homohexamer 1 0.5 VCP like ATPase from T. Acidophilum Thermoplasma acidophilum 83 6 Hexamer true Escherichia coli BL21(DE3) pProEx O05209 GO:0008152 GO:0000166 GO:0005524 GO:0016787 IPR003593 IPR005938 IPR009010 IPR003959 IPR003960 IPR004201 IPR029067 IPR003338 IPR027417 singleParticle particle 7 7.5
50 mM HEPES, 100 mM NaCl, 5mM ATPgS
400 mesh Cu/Rh grid with homemade nanofabricated holy carbon support
 ETHANE-PROPANE MIXTURE 100 FEI VITROBOT MARK III Blot for 4 seconds before plunging FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 1.8 3.5 25000.0 34483.0 GATAN LIQUID NITROGEN 2015-05-01 GATAN K2 SUMMIT (4k x 4k) 1.45 514 30
Every image is the average of 30 frames recorded by the direct electron detector
32.
Whole frame alignment was performed with alignframes_lmbfgs, and the resulting averages of frames were used for CTF determination with CTFFIND4. Automated particle picking was done in Relion. Individual particle alignment and exposure weighting was done with alignparts_lmbfgs. Classification and refinement were perfomed with Relion.
Each Micrograph
 C6 7.8 OTHER Relion 16538 emd_3435.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 371.2 371.2 371.2 90.0 90.0 90.0 X Y Z -0.2134006 0.36827409 0.00096952 0.01138123 1.45 1.45 1.45 0.083 AUTHOR Stacked-ring state
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