2024-11-13 REL PDBj PDBj PDBj 2022-09-08 2023-07-12 2023-07-12 2024-11-13 National Natural Science Foundation of China (NSFC) 32022037 China National Natural Science Foundation of China (NSFC) 81803429 China cryo-EM structure of Omicron BA.5 S protein in complex with XGv289 Xia XY Zhang YY Chi XM Huang BD Wu LS Zhou Q SARS-CoV-2, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex Chi X Xia L Zhang G Chi X Huang B Zhang Y Chen Z Han J Wu L Li Z Sun H Huang P Yu C Chen W Zhou Q Comprehensive structural analysis reveals broad-spectrum neutralizing antibodies against SARS-CoV-2 Omicron variants. Cell Discov UK 9 37 37 2023 37015915 doi:10.1038/s41421-023-00535-1 2056-5968 8gtp FULLOVERLAP Cryo-EM structure of Omicron BA.5 S protein in complex with XGv289 Cryo-EM structure of Omicron BA.5 S protein in complex with XGv289 0 1 2 3 S protein of Omicron BA.5 variant 1 1 Severe acute respiratory syndrome coronavirus 2 XGv289 1 2 3 Homo sapiens Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 0.141326812 3 Homo sapiens LEVO MFVFLVLLPLVSSQCVNLITRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAISGTNGTKRFDNP VLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDVYYHKNNKSWMESEFRVYSS ANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLGRDLPQGFSALEPLVDLPIGINITRFQTLL ALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQP TESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVI RGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGNKPCNG VAGVNCYFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPF QQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNV FQTRAGCLIGAEYVNNSYECDIPIGAGICASYQTQTKSHRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISV TTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNF SQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTI TSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNHNAQALNTL VKQLSSKFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDF CGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFV SGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQE LGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT P0DTC2 heavy chain of XGv289 Homo sapiens 0.013098562 3 Homo sapiens LEVO QVQLVQSGAEVKKPGASLKVSCRASGYTFTSHFIHWVRQAPGQGLEWMGIINPSGGASYAQNFRDRVTMTTDPSTSTVYM ELGSLRSEDTAVYYCARAEGSSWLGWFDPWGQGTLVTVSS light chain of XGv289 Homo sapiens 0.011586687 3 Homo sapiens LEVO SVLTQPPSASGTPGQRVTIPCSGSSSNIGNNYVYWYQQLPGTAPKLLVYGNNQRPSGVPDRFSVSKSGTSASLAISGLRS EDEADYYCAAWDDGLSGSGWVFGGGTKLTVL 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 33 NAG singleParticle particle 8.0 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.2 2.2 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 BIOQUANTUM (6k x 4k) 50.0 1 3.1 FSC 0.143 CUT-OFF RELION 3.0.6 137483 ANGULAR RECONSTITUTION MAXIMUM LIKELIHOOD emd_34261.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 310.176 310.176 310.176 90.0 90.0 90.0 X Y Z -2.0256917 4.1359477 0.004092677 0.10653239 1.077 1.077 1.077 0.3 AUTHOR emd_34261_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 310.176 310.176 310.176 90.0 90.0 90.0 X Y Z -0.77397805 1.7153503 0.0033899664 0.10253307 1.077 1.077 1.077 AUTHOR emd_34261_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 288 288 288 0 0 0 288 288 288 310.176 310.176 310.176 90.0 90.0 90.0 X Y Z -0.7075238 1.7698642 0.003328436 0.10226324 1.077 1.077 1.077 AUTHOR