2026-08-12 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY chem_comp em_admin pdbx_entry_details pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_struct_conn_angle struct_conn _chem_comp.formula _em_admin.last_update _pdbx_entry_details.has_protein_modification PDBj PDBj 2022-07-28 2023-08-16 2023-08-16 2026-08-12 Chinese Academy of Sciences QYZDY-SSW-SMC003 China Chinese Academy of Sciences XDB17000000 China National Basic Research Program of China (973 Program) 2015CB150100 China Shen LL Gao YZ Wang WD Zhang X Shen JR Wang PY Han GY Photosystem II, Pcb, PHOTOSYNTHESIS Shen L Gao Y Tang K Qi R Fu L Chen JH Wang W Ma X Li P Chen M Kuang T Zhang X Shen JR Wang P Han G Sci Adv US 10 eadk7140 eadk7140 2024 38394197 doi:10.1126/sciadv.adk7140 2375-2548 7ymi FULLOVERLAP EMDB EMD-33929 associated EM volume

PSII-Pcb Dimer of Acaryochloris Marina

PSII-Pcb Dimer of Acaryochloris Marina PSII-Pcb Dimer of Acaryochloris Marina 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 Acaryochloris marina MBIC11017 Photosystem II protein D1 2 Acaryochloris marina MBIC11017 0.039695211 2 LEVO MTTVLQRRESASAWERFCSFITSTNNRLYIGWFGVLMIPTLLTAVTCFVIAFIGAPPVDIDGIREPVAGSLLYGNNIITG AVVPSSNAIGLHLYPIWEAASLDEWLYNGGPYQLIIFHYMIGCICYLGRQWEYSYRLGMRPWICVAYSAPLAATYSVFLI YPLGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMFGVAGVLGGSLFAAMHGSLVSSTLVRETTEGESANYGYKFG QEEETYNIVAAHGYFGRLIFQYASFSNSRSLHFFLGAWPVVCIWLTAMGISTMAFNLNGFNFNHSIVDSQGNVVNTWADV LNRANLGFEVMHERNAHNFPLDLAAGESAPVALTAPVING A5A8K9 1.10.3.9 Photosystem II CP47 reaction center protein Acaryochloris marina MBIC11017 0.056518745999999995 2 LEVO MGLPWYRVHTVVLNDPGRLLSVHLMHTALVSGWAGSMALYELAKYDPSDPVLNPMWRQGTFVMPVMTRIGVTHSWSGWTV TGEPWVTQPGILGAHLNFFSYEGVILMHILAAGLFFLAAVWHWINWDLDIYYPDGSSEPASDWPKIFGLHLLTLGIVCFG FGSLHLTGILGPGMWVSDPYGLTGHVQGVSPDWRPFAFDPYNPTGLVTHHISAGIALIIGGIFHTVSRPSERLYNALSMG NVETVLSSSVAFVAAAAFVMVGTMWYGSATTPIELFGPTRYQWDSGYFQTEIQRRVQSGQTWDQIPEKLVFYDYIGNSPA KGGLFRTGAMNSGDGIARAWEGHPTFTDSEGRELFVRRMPNFFETFPVVLTDKDGVVRADIPFRRAESRYSFEQKGVSVS FEGGTLNGQTFTDAPSVKKYARKAQLGEPFEFDRETLGSDGVFRTSTRGWFAFSHSCYALLFFFGHWWHGARTIFKDVFE GVDPNLPEEQVEWGVFQKVGDTTTRA B0CFM2 Photosystem II CP43 reaction center protein Acaryochloris marina MBIC11017 0.053978319999999996 2 LEVO MKVCALGWHPKTKSMKTSSSLRRFYHVETPFNPSAAGYDRATTGYGWWAGNARLTDLSGQLTGAHIAHAGMITFWAGAMT LFEVSHFIPEKPMYEQGSILLAHLAAEGFGVGPGGEVISTYPYFVIGAIHLIASAVLGFGGLYHTFRGPAKFEDYSDWWG YDWEDKEKMMQILGIHLIFLGIGALAFAAKAMFFGGLYDPWAPGGGNVRLITNPTWNLGTFLGYITRSPWGEGGWIVSVN NLEDVVGGHLLVGVHYIFGGVFHILVKPWGWVRRAYVWSGEAYLSYSLGALYMCGMIAVGYVWFNNTVYPSEFYGPTAAE ASQAQAMTFLIRDQRLGANIASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLRNDIQPWQ ARRAAEYMTHAPLGALNSVGGVATEINSVNYVSPRSWLSTSHFCLAFFFFVGHIWHSGRARAAAAGFEKGIERKTEYALS LPDIDATSVD B0C1V7 Photosystem II D2 protein 1 Acaryochloris marina MBIC11017 0.039291851999999995 2 LEVO MTIAVGRAQERGWFDVLDDWLKRDRFVFIGWSGILLFPCAFLSIGGWFTGTTFVTSWYTHGLASSYLEGANFLTVAVSTP ADSLGHSLLLLWGPEAQGDFTRWCQLGGLWNFTTLHGVFGLIGFMLRQFEIARLVGVRPYNAVAFSGPIAVYVSVFLMYP LGQSSWFFAPSWGVTSIFRFLLFAQGFHNLTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGQDANTFAAFTPTQAE ETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWASAIGLVGIALNMRAYDFVSQEIRAAEDPEFETFYTKNILL NEGLRAWMAPQDQIHENFIFPEEVLPRGNAL B0C1V6 1.10.3.9 Cytochrome b559 subunit alpha Acaryochloris marina MBIC11017 0.009495788 2 LEVO MSGRTGERPFGDIVTSIRYWIIHTITVPMLFLAGWLFVSTGLAYDVFGTPRPNEYFDQARQGLPLVTDRYEGKQQIDEFT KGL B0C6T2 Photosystem II protein Y Acaryochloris marina MBIC11017 0.011277319999999999 2 LEVO MTARTQLQRPPQRKYPIYTVRWLAVHTLGVPLVWFLGAIASMQFINRMDAYEAVAPTMIAGIDLRLALVLAPILFSVVWN VIFFGGPTLQELQEVLQRE B0C2V2 Photosystem II 10 kDa phosphoprotein PsbH Acaryochloris marina MBIC11017 0.007683901 2 LEVO MPKQTWWGDVLKGNNNSEAGKFVPGWGTTPVMAGFVVMITLLLLIMLQVYNHTIVLDGVDAGWTSLGGFGQ B0CDZ2 Photosystem II protein PsbI Acaryochloris marina MBIC11017 0.003948692 2 LEVO MAILKFVTYAWIIFVISLFFFGFISSDTTRNPKA B0C5R5 Photosystem II reaction center protein K Acaryochloris marina MBIC11017 0.004939008 2 LEVO MEAVLLLAKLPEAFSVFSPIVDVMPVIPLFFLALAFVWQAAVGFK B0C6Z7 Photosystem II reaction center protein L Acaryochloris marina MBIC11017 0.004254045 2 LEVO MATPNPNKQPVELNRASLFIGLLLVLVLALLFSSYFFN B0C6T1 Photosystem II reaction center protein M Acaryochloris marina MBIC11017 0.003614302 2 LEVO MPVNDLGAIATALFVFIPCVFLILLYAQTASRGS B0CFM0 Photosystem II reaction center protein T Acaryochloris marina MBIC11017 0.005442382999999999 2 LEVO MDVIAYVFILACIIGLFFFAVFFREKPTLDKIQSRSFRESSQSTRR B0C605 Photosystem II reaction center X protein Acaryochloris marina MBIC11017 0.004443303 2 LEVO MTITPSLQGFFYSILFGAIVLGLLGGGFIFFSQKDKIVRR B0BYW9 Photosystem II reaction center protein Ycf12 Acaryochloris marina MBIC11017 0.004015932 2 LEVO MDLLAAINLQVVLQLTMLGAVVIAGPIVVLLVALRSNAT Photosystem II reaction center protein Z Acaryochloris marina MBIC11017 0.006395631999999999 2 LEVO MSVLFQLLIAAFVALSFAMIIGVPVVFSTGDASDDANKLIWGGAAAWVVLLFVAALASIVVI B0C0S7 High light inducible protein Acaryochloris marina MBIC11017 0.038753934 2 LEVO MQTYGNQNVEYGWWSGNSRFTDFSAQFLAAHIGQIASMTFFAGSITLFELSRYNPDIPLYAQGFVCLPQLSRVGFGVGAG GAVVDTYPFFAVGMIHLFAAAVFGSGAIFHILTGPKVLADSDSAASQRFHFEWDDFETQGRILGHHLLFLGSGALLFVVW AATHGIYDPNVGEVRAVSPGFDIVRIFKYGWATPGFNPFFVDNLEDVMGGHLFIALIDIAGGIYHILVKPWPYTERIFTK SGEALLGYALGGLGLMGLVAAYFCSVNDVVFPVEFFGPVLQPNLGFLPNFADTLDVSASGHTSRFWIANFHYFWGFYCIQ GHLFHALRASGFDFRVLTKFFTTETVELGADI B0C3E5 Unknown protein Acaryochloris marina MBIC11017 0.0035073139999999997 2 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) High light inducible protein Acaryochloris marina MBIC11017 0.038612156 2 LEVO MATKVDTAPEYPWYSGNSRLEDPAVQGKWLAAHIAQIALIVFWVGLNTFSENQAFDTSLPMFDQGLVLIPHLAALGFGVG SGGVVTNTFVFTQIGAIHMVSSFVLFGGAYFHAKIGPSVLADGGRGNTDQFAFSWDDPKKLGYILGHHLVLIGTGALLFV LWIKFHGIYDPTIGEVRTVAAPGSTIGDVVLKYGWFTPGYNCFFVDNLEDLASGHLFIGLVDIAGGIFHINVAPLPWSKV VNKYTYSPDGLLGTAIGGLALMGFISAYFCAVNTLVYPVEFFGPALEVKFGIAPYFKDTADLADGFYTSRAWLANITYYL AFYMLQGHLYHTLKAMGFKFEDIPAVIARDTGNAPA B0C576 High light inducible protein Acaryochloris marina MBIC11017 0.038707781000000004 2 LEVO MQTYGQTDVEYGWWSGNSRFSDYSGQFLAAHNGQIASMCFWAGSFTLFEVSRFNPDLPVYQQNLVCIPQLARAGWGVAAG GAVVDTYPYFAIAMIHLVAAAILGAGALYGVTKGPKVLADSEFSGAQRFHFEWDDFETQGRILGHHLLFLGAACLLFATW ACTHGVYDPVAGEVRAISPSLNLVRFFKYGWATPGFNPYFVNNLEDVIGGHFFVSSLYIAGGIWHILVKPWPYTDKIFVK SGEALLAYALAGLAFAGFNAAYFCSVNDVVFPVELFGPVLEAKLNVTPYFAETLDASDGGHTTRFWISNFHYYWAFYCLQ GHLFHALRSYGFDFRRIPRALASLTPQAN B0C6I0 High light inducible protein Acaryochloris marina MBIC11017 0.037967472999999995 2 LEVO MTASVRGRRGGKVAVQTDLPTSVLSNFENEWWAGNVRMTDLSGMLLGAHLCHAALMSVVPGAFIVQEVARYQPGVSLPDQ GMIFMPHLAALGVGVGAGGEIVDTYPFFVIGVLHFFIAAVCCAAGLFHTFRGETDLNDAPDDSYAAAFRYEWDDFESLST IVGHHLVFISVACLIFAVNATYGTGMYDINTDTVHQISPNLNPITLIGYLFGFTPDGWSGAGMAAVNNMEDVIGGHFLIG VIDLLGAAFHILYRKPTPLFTKHPVFSPANGGWSNVGMLNSELILSWSVASVGFMGISSSLFIRYCDVAYPPVFHGVDRT GAATLQLILGLVWMLGGGLWHGLRGERLYAANK B0C3E6 CHLOROPHYLL D 0.000895462 212 CL7 PHEOPHYTIN A 0.0008712 4 PHO (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene 0.000536873 22 8CT 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL 0.0007951159999999999 14 SQD 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 12 LHG 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 0.0007871579999999999 8 LMG DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 4 DGD FE (II) ION 5.5845e-05 2 FE2 BICARBONATE ION 6.1017e-05 2 BCT 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE 0.000749201 2 PL9 PROTOPORPHYRIN IX CONTAINING FE 0.000616487 2 HEM (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol 0.000568871 28 ZEX singleParticle particle 6.5 ETHANE FEI TITAN KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 1.0 2.5 GATAN K3 BIOQUANTUM (6k x 4k) 50.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 3.3 FSC 0.143 CUT-OFF 132346 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_33929_msk_1.map emd_33929_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 513.60004 513.60004 513.60004 90.0 90.0 90.0 X Y Z -0.008481277 0.032888204 0.000109546265 0.0013467552 1.07 1.07 1.07 AUTHOR ::::EMDATABANK.org::::EMD-33929:::: emd_33929_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 513.60004 513.60004 513.60004 90.0 90.0 90.0 X Y Z -0.009399438 0.03271994 0.00010840865 0.001352579 1.07 1.07 1.07 AUTHOR 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