2025-07-02 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond em_admin pdbx_entry_details pdbx_modification_feature _em_admin.last_update DATA_COLLECTION em_admin em_software _em_admin.last_update _em_software.name PDBj PDBj 2022-07-22 2022-12-28 2022-12-28 2025-07-02 The University Grants Committee, Research Grants Council (RGC) Hong Kong Omicron spike trimer bound with P3E6 (Local Refinement) Tang B Dang S COVID-19, P3E6, Omicron, spike protein, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex Luo M Zhou B Reddem ER Tang B Chen B Zhou R Liu H Liu L Katsamba PS Au KK Man HO To KK Yuen KY Shapiro L Dang S Ho DD Chen Z Structural insights into broadly neutralizing antibodies elicited by hybrid immunity against SARS-CoV-2. Emerg Microbes Infect US 12 2146538 2146538 2023 36354024 doi:10.1080/22221751.2022.2146538 2222-1751 7ykj FULLOVERLAP The complex of Omicron Spike trimer bound with P3E6 Fab The complex of Omicron Spike trimer bound with P3E6 Fab 0 1 2 3 Severe acute respiratory syndrome coronavirus 2 Spike glycoprotein 1 1 Homo sapiens P3E6 heavy chain,P3E6 light chain 1 2 3 Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 0.13391196900000002 2 Homo sapiens LEVO MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVISGTNGTKRFDNP VLPFNDGVYFASIEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDHKNNKSWMESEFRVYSSANN CTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIVREPEDLPQGFSALEPLVDLPIGINITRFQTLLA LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPT ESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIR GDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGV AGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLKGTGVLTESNKKFLPFQ QFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVF QTRAGCLIGAEYVNNSYECDIPIGAGICASYQTQTKSHGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVT TEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFS QILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFKGLTVLPPLLTDEMIAQYTSALLAGTIT SGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNHNAQALNTLV KQLSSKFGAISSVLNDIFSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFC GKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVS GNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQEL GKYEQ P0DTC2 P3E6 heavy chain Homo sapiens 0.01324267 1 Homo sapiens LEVO EVQLLDSGGGLVQPGGSLRLSCAVSGFTFSNYAMNWVRQTPGKELEWVSAISGTGDDTHYADSVRGRFTISSDNSKNTVY LQMNSLRVEDTAIYYCAKAISRYPWGCLDYWGQGTLVTVSS P3E6 light chain Homo sapiens 0.011741047 1 Homo sapiens LEVO EIVLTQSPGTLSLSPGERATLSCRASQSVSNSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLE PEDFAVYYCQQYGTSPRLTFGGGTKVEIK singleParticle particle 7.4 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 2.5 GATAN K3 (6k x 4k) 50.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 6Z97 3.5 FSC 0.143 CUT-OFF 107197 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_33892.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 339.19998 339.19998 339.19998 90.0 90.0 90.0 X Y Z -2.9147913 5.7225432 0.0015983165 0.06731041 1.06 1.06 1.06 0.35 AUTHOR emd_33892_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 339.19998 339.19998 339.19998 90.0 90.0 90.0 X Y Z -0.6888584 1.9091934 0.0031695145 0.076478384 1.06 1.06 1.06 AUTHOR emd_33892_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 339.19998 339.19998 339.19998 90.0 90.0 90.0 X Y Z -0.76593566 1.9316858 0.0031797718 0.076633506 1.06 1.06 1.06 AUTHOR