<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3368" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2016-03-08</deposition>
         <header_release>2016-04-13</header_release>
         <map_release>2016-06-15</map_release>
         <update>2016-07-13</update>
      </key_dates>
      <title>Cryo-EM structure of yeast cytoplasmic exosome</title>
      <authors_list>
         <author>Liu JJ</author>
         <author>Niu CY</author>
         <author>Wu Y</author>
         <author>Tan D</author>
         <author>Wang Y</author>
         <author>Ye MD</author>
         <author>Liu Y</author>
         <author>Zhao WW</author>
         <author>Zhou K</author>
         <author>Liu QS</author>
         <author>Dai JB</author>
         <author>Yang XR</author>
         <author>Dong MQ</author>
         <author>Huang N</author>
         <author>Wang HW</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Liu JJ</author>
               <author order="2">Niu CY</author>
               <author order="3">Wu Y</author>
               <author order="4">Tan D</author>
               <author order="5">Wang Y</author>
               <author order="6">Ye MD</author>
               <author order="7">Liu Y</author>
               <author order="8">Zhao WW</author>
               <author order="9">Zhou K</author>
               <author order="10">Liu QS</author>
               <author order="11">Dai JB</author>
               <author order="12">Yang XR</author>
               <author order="13">Dong MQ</author>
               <author order="14">Huang N</author>
               <author order="15">Wang HW</author>
               <title>Cryo-EM structure of yeast cytoplasmic exosome</title>
               <journal>cell research</journal>
               <volume>26</volume>
               <first_page>822</first_page>
               <last_page>837</last_page>
               <year>2016</year>
               <external_references type="PUBMED">27174052</external_references>
               <external_references type="DOI">doi:10.1038/cr.2016.56</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Exosome complex</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Exosome complex</name>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">0.35</experimental>
               <theoretical units="MDa">0.35</theoretical>
               <method>SDS-PAGE</method>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="PM/Scl complex">Exosome complex</name>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
               <synonym_organism>Yeast</synonym_organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.35</experimental>
               <theoretical units="MDa">0.35</theoretical>
            </molecular_weight>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">1.25</concentration>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <instrument>FEI VITROBOT MARK IV</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <date>2015-01-03</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>Ctffind3</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <resolution res_type="BY AUTHOR" units="&#8491;">13.0</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>EMAN2, IMAGIC, Relion-1.3</name>
                  </software>
               </software_list>
               <number_images_used>55000</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
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      <symmetry>
         <space_group>1</space_group>
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      <dimensions>
         <col>90</col>
         <row>90</row>
         <sec>90</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
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      <spacing>
         <x>90</x>
         <y>90</y>
         <z>90</z>
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      <cell>
         <a units="&#8491;">235.1772</a>
         <b units="&#8491;">235.1772</b>
         <c units="&#8491;">235.1772</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.04306174</minimum>
         <maximum>0.09575678</maximum>
         <average>0.00022029</average>
         <std>0.00855643</std>
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         <y units="&#8491;">2.61308</y>
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      <contour_list>
         <contour primary="true">
            <level>0.02</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of Exosome-RNA18 complex</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3368::::</details>
   </map>
</emd>