REL PDBe PDBe PDBe 2016-03-04 2016-03-23 2016-03-23 2016-06-22 Natively membrane-anchored full-length Herpes simplex virus 1 glycoprotein B Zeev-Ben-Mordehai T Vasishtan D Duran AH Vollmer B White P Pandurangan AP Siebert CA Topf M Grunewald K membrane fusion, class III fusogen, pre-fusion Zeev-Ben-Mordehai T Vasishtan D Duran AH Vollmer B White P Pandurangan AP Siebert CA Topf M Grunewald K Two distinct trimeric conformations of natively membrane-anchored full-length Herpes simplex virus 1 glycoprotein B PROC.NAT.ACAD.SCI.USA 113 4176 4181 2016 27035968 doi:10.1073/pnas.1523234113 Glycoprotein B of Herpes Simplex Virus 1 Glycoprotein B of Herpes Simplex Virus 1
Sample bound to extracellular vesicles
Trimeric 1 0.3 Glycoprotein B Human herpesvirus 1 HSV-1 0.3 3 Trimeric true Mesocricetus auratus BHK 21 pPEP98 P06437 GO:0016032 GO:0019062 GO:0046718 GO:0016020 GO:0016021 GO:0019012 GO:0019031 GO:0020002 GO:0033644 GO:0044174 GO:0044175 GO:0044177 GO:0044178 GO:0055036 IPR000234 subtomogramAveraging particle 7.4
25mM HEPES, 130mM NaCl
Holey carbon on top of 200 mesh gold grid.
 ETHANE-PROPANE MIXTURE 77 HOMEMADE PLUNGER Blot for 3 sec before plunging FEI POLARA 300 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2 6.0 3.0 95000.0 GATAN LIQUID NITROGEN 80 100 85 Gatan Quantum 964 0.0 20.0
counting mode
2014-09-16 GATAN K2 SUMMIT (4k x 4k) 20 60 16. Polara holder -52 53 C3 23.0 OTHER IMOD, PEET 1909
CTF correction of tilt series prior to tomogram reconstruction
 emd_3362.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 80 80 80 0 0 0 80 80 80 368.0 368.0 368.0 90.0 90.0 90.0 X Y Z -15.234740260000001 12.593956950000001 -0.48875326 1.23137927 4.6 4.6 4.6 2.74 AUTHOR Subtomogram average of HSV-1 gB on membrane
::::EMDATABANK.org::::EMD-3362::::
 2gum A RIGID BODY FIT Chimera, Flex-EM, ADP-EM, GMFit, TEMPy
Individual domains of 2GUM were fitted separately, using a hierarchical fitting approach
CCC, SCCC, Atom Protrusion Score REAL emd_3362_fsc.xml