2024-05-15 REL PDBj PDBj PDBj 2022-06-13 2023-05-03 2023-05-03 2024-05-15 Science and Engineering Research Board (SERB) CRG/2019/001788 India Council of Scientific & Industrial Research (CSIR) MLP-139 India Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth Sengupta J Baid P Mycobacterium 50S subunit, Domain IV of 23S rRNA, Log Phase, RIBOSOME Baid P Sengupta J Cryo-EM captures a unique conformational rearrangement in 23S rRNA helices of the Mycobacterium 50S subunit. Int.J.Biol.Macromol. UK 253 126876 126876 2023 37709237 doi:10.1016/j.ijbiomac.2023.126876 0141-8130 0708 IJBMDR 7y41 FULLOVERLAP Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 Mycolicibacterium smegmatis MC2 155 1.8 50S ribosomal subunit bL37 Mycolicibacterium smegmatis MC2 155 0.0028413749999999997 1 LEVO MAKRGRKKRDRKHSKANHGKRPNA A0QTP4 23S ribosomal RNA Mycolicibacterium smegmatis MC2 155 1.012140938 1 UAAGUGUUUAAGGGCGCAUGGUGGAUGCCUUGGCACUGGGAGCCGAUGAAGGACGUAGGAGGCUGCGAUAAGCCUCGGGG AGCUGUCAACCGAGCGUUGAUCCGAGGAUGUCCGAAUGGGGAAACCCGGCACGAGUGAUGUCGUGUCACCAGGCGCUGAA UAUAUAGGCGUCUGGGGGGAACGCGGGGAAGUGAAACAUCUCAGUACCCGUAGGAAGAGAAAACAAAAUGUGAUUCCGUG AGUAGUGGCGAGCGAAAGCGGAGGAUGGCUAAACCGUAUGCAUGUGAUACCGGGUAGGGGUUGUGUGUGCGGGGUUGUGG GACCUAUCUUUCCGGCUCUACCUGGCUGGAGGGCAGUGAGAAAAUGUUGUGGUUAGCGGAAAUGGCUUGGGAUGGCCUGC CGUAGACGGUGAGAGCCCGGUACGUGAAAACCCGACGUCUGUCUUGAUGGUGUUCCCGAGUAGCAGCGGGCCCGUGGAAU CUGCUGUGAAUCUGCCGGGACCACCCGGUAAGCCUGAAUACUUCCCAGUGACCGAUAGCGGAUUAGUACCGUGAGGGAAU GGUGAAAAGUACCCCGGGAGGGGAGUGAAAGAGUACCUGAAACCGUGCGCUUACAAUCCGUCAGAGCCCUCGACGUGUCG UGGGGUGAUGGCGUGCCUUUUGAAGAAUGAGCCUGCGAGUCAGGGACAUGUCGCGAGGUUAACCCGGGUGGGGUAGCCGC AGCGAAAGCGAGUCUGAAUAGGGCGUAUCCACACAAGAGUGUGUGGUGUAGUGGUGUGUUCUGGACCCGAAGCGGAGUGA UCUACCCAUGGCCAGGGUGAAGCGCGGGUAAGACCGCGUGGAGGCCCGAACCCACUUAGGUUGAAGACUGAGGGGAUGAG CUGUGGGUAGGGGUGAAAGGCCAAUCAAACUCCGUGAUAGCUGGUUCUCCCCGAAAUGCAUUUAGGUGCAGCGUCGCAUG UUUCUUGCCGGAGGUAGAGCUACUGGAUGGCCGAUGGGCCCCACAGGGUUACUGACGUCAGCCAAACUCCGAAUGCCGGU AAGUCCAAGAGUGCGGCAGUGAGACGGCGGGGGAUAAGCUCCGUGCGUCGAGAGGGAAACAGCCCAGAUCGCCGGCUAAG GCCCCUAAGCGUGUGCUAAGUGGAAAAGGAUGUGCAGUCGCGAAGACAACCAGGAGGUUGGCUUAGAAGCAGCCACCCUU GAAAGAGUGCGUAAUAGCUCACUGGUCAAGUGAUUGUGCGCCGAUAAUGUAGCGGGGCUCAAGCACACCGCCGAAGCCGC GGCAGCCAACGUGUUGGCUGGGUAGGGGAGCGUCCUGCAUCCGGUGAAGCCGCCGAGUGAUCGAGUGGUGGAGGGUGUGG GAGUGAGAAUGCAGGCAUGAGUAGCGAUUAGGCAAGUGAGAACCUUGCCCGCCGAAAGACCAAGGGUUCCUGGGCCAGGC CAGUCCGCCCAGGGUGAGUCGGGACCUAAGGCGAGGCCGACAGGCGUAGUCGAUGGACAACGGGUUGAUAUUCCCGUACC CGUGUAUGUGCGUCCAUGAUGAAUCAGCGGUACUAACCAUCCAAAACCACCGUGACCGCACCUUUCGGGGUGUGGCGUUG GUGGGGCUGCAUGGGACCUUCGUUGGUAGUAGUCAAGCGAUGGGGUGACGCAGGAAGGUAGCCGUACCGGUCAGUGGUAA UACCGGGGUAAGCCUGUAGGGAGUCAGAUAGGUAAAUCCGUCUGGCAUAUAUCCUGAGAGGUGAUGCAUAGCCGAGUGAG GCGAAUUCGGUGAUCCUAUGCUGCCGAGAAAAGCCUCUAGCGAGGACAUACACGGCCCGUACCCCAAACCAACACAGGUG GUCAGGUAGAGAAUACUAAGGCGUACGAGUGAACUAUGGUUAAGGAACUCGGCAAAAUGCCCCCGUAACUUCGGGAGAAG GGGGACCCACAUGGCGUGUAAGCCUUUACGGCCCAAGCGUGAGUGGGUGGCACAAACCAGUGAGAAGCGACUGUUUACUA AAAACACAGGUCCGUGCGAAGUCGCAAGACGAUGUAUACGGACUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGACCCG UUAACUCCCUUUGGGGGUGAAGCGGAGAAUUUAAGCCCCAGUAAACGGCGGUGGUAACUAUAACCAUCCUAAGGUAGCGA AAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAACGACUUCUCAACUGUCUCAACCAUAGACUCGGCGAAAU UGCACUACGAGUAAAGAUGCUCGUUACGCGCGGCAGGACGAAAAGACCCCGGGACCUUCACUACAACUUGGUAUUGGUGC UCGAUACGGUUUGUGUAGGAUAGGUGGGAGACUGUGAAGCUCACACGCCAGUGUGGGUGGAGUCGUUGUUGAAAUACCAC UCUGAUCGUAUUGGGCCUCUAACCUCGGACCGUAUAUCCGGUUCAGGGACAGUGCCUGGUGGGUAGUUUAACUGGGGCGG UUGCCUCCUAAAAUGUAACGGAGGCGCCCAAAGGUUCCCUCAACCUGGACGGCAAUCAGGUGUUGAGUGUAAGUGCACAA GGGAGCUUGACUGCGAGACGGACAUGUCGAGCAGGGACGAAAGUCGGGACUAGUGAUCCGGCACCUCUGAGUGGAAGGGG UGUCGCUCAACGGAUAAAAGGUACCCCGGGGAUAACAGGCUGAUCUUCCCCAAGAGUCCAUAUCGACGGGAUGGUUUGGC ACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGGAGCAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCG AGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCUCUAUCCGCCGCGCGCGUCAGAAGCUUGAGGAAACCUGUCCCUAGU ACGAGAGGACCGGGACGGACGAACCUCUGGUAUACCAGUUGUCCCACCAGGGGCACGGCUGGAUAGCCACGUUCGGACAG GAUAACCGCUGAAAGCAUCUAAGCGGGAAACCUCUUCCAAGACCAGGCUUCUCACCCUCUAGGAGGGAUAAGGCCCCCCG CAGACCACGGGAUUGAUAGACCAGACCUGGAAGCCUAGUAAUAGGUGCAGGGAACUGGCACUAACCGGCCGAAAACUUAC CP000480.1 5S ribosomal RNA Mycolicibacterium smegmatis MC2 155 0.038061816 1 GUUACGGCGGUCCAUAGCGGCAGGGAAACGCCCGGUCCCAUCCCGAACCCGGAAGCUAAGCCUGCCAGCGCCGAUGAUAC UACCCAUCCGGGUGGAAAAGUAGGACACCGCCGAACAC CP000480.1 50S ribosomal protein L2 Mycolicibacterium smegmatis MC2 155 0.030425945 1 LEVO MGIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGKGGRNAHGRITTRHKGGGHKRAYRVIDFRRHDKDGVNAKVA HIEYDPNRTANIALLHYLDGEKRYIIAPQGLKQGDVIESGANADIKPGNNLPLRNIPAGTVIHAVELRPGGGAKLARSAG VSIQLLGKEGTYAALRMPSGEIRRVDVRCRATVGEVGNAEQSNINWGKAGRMRWKGKRPTVRGVVMNPVDHPHGGGEGKT SGGRHPVSPWGKPEGRTRKPNKPSDKLIVRRRRTGKKR A0QSD4 50S ribosomal protein L3 Mycolicibacterium smegmatis MC2 155 0.023011392999999998 1 LEVO MARKGILGTKLGMTQVFDENNKVVPVTVVKAGPNVVTRIRTTERDGYSAVQLAYGEISPRKVIKPVAGQFAAAGVNPRRH VAELRLDDEAAVAEYEVGQELTAEIFSDGAYVDVTGTSKGKGFAGTMKRHGFRGQGAAHGAQAVHRRPGSIGGCATPGRV FKGTRMSGRMGNDRVTTQNLKVHKVDAENGVLLIKGAIPGRNGGLVVVRSAIKRGEK A0QSD1 50S ribosomal protein L4 Mycolicibacterium smegmatis MC2 155 0.022920949 1 LEVO MTLKVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRARQGSTR APQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGR TDEVGAKSVRNLPGVHVISPDQLNTYDVLNADDVVFSVEALNAYISANSKEGASV A0QSD2 50S ribosomal protein L5 Mycolicibacterium smegmatis MC2 155 0.021152328 1 LEVO MTTTEKALPRLKQRYREEIREALQQEFNYANVMQIPGVVKVVVNMGVGDAARDAKLINGAINDLALITGQKPEVRRARKS IAQFKLREGMPIGARVTLRGDRMWEFLDRLISIALPRIRDFRGLSPKQFDGTGNYTFGLNEQSMFHEIDVDSIDRPRGMD ITVVTTATNDAEGRALLRALGFPFKEN A0QSG1 50S ribosomal protein L6 Mycolicibacterium smegmatis MC2 155 0.019483361 1 LEVO MSRIGKQPVPVPSGVDVTINGQNLSVKGPKGTLTLDVAEPISVSRAEDGAIVVTRPDDERRSRSLHGLSRTLIANLVTGV TEGYTQKMEIFGVGYRVQLKGQNLEFALGYSHPVLIEAPEGITFAVESPTKFSVSGIDKQKVGQISAVIRRLRRPDPYKG KGVRYEGEQIRRKVGKTGK A0QSG4 50S ribosomal protein L10 Mycolicibacterium smegmatis MC2 155 0.018035736 1 LEVO MAKADKATAVADIAEQFKASTATVVTEYRGLTVANLAELRRALGDSATYTVAKNTLVKRAASEAGIEGLDELFAGPTAIA FVKGEAVDAAKAIKKFAKDNKALVIKGGYMDGKALSVADVEKIADLESREVLLAKLAGAMKGNLSKAAGLFNAPASQVAR LAAALQEKKAGEEAA A0QS62 50S ribosomal protein L11 Mycolicibacterium smegmatis MC2 155 0.015023373999999999 1 LEVO MAPKKKVAGLIKLQIQAGQANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGNVIPVEITVYEDRSFTFALKTPPAAKL LLKAAGVQKGSGEPHKTKVAKVTWDQVREIAETKKADLNANDIDAAAKIIAGTARSMGITVE A0QS45 50S ribosomal protein L13 Mycolicibacterium smegmatis MC2 155 0.016146689 1 LEVO MPTYTPKAGDTTRSWYVIDASDVVLGRLASAAATLLRGKHKPTFTPNVDGGDFVIVINADKIAVSGDKLTKKFAYRHSGY PGGLRKRTIGELLEKHPTRVVENAIIGMLPHNKLGRQIQKKLKVYAGPDHPHAAQQPIPFEIKQVAQ A0QSP8 50S ribosomal protein L14 Mycolicibacterium smegmatis MC2 155 0.013400625 1 LEVO MIQQESRLKVADNTGAKEILCIRVLGGSSRRYAGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRADGSYIKFD ENAAVIIKNDNDPRGTRIFGPVGRELREKKFMKIVSLAPEVL A0QSF9 50S ribosomal protein L15 Mycolicibacterium smegmatis MC2 155 0.015602244 1 LEVO MSVIKLHDLKPAPGEKKAKTRVGRGEGSKGKTAGRGTKGTKARKNVPVMFEGGQMPIHMRLPKLKGFKNRFRTEYQVVNV GDINKAFPQGGTVGVDELVAKGLVRKNSLVKVLGDGKLTVKVDVTANKFSGSAREAITAAGGSATEL A0QSG8 50S ribosomal protein L16 Mycolicibacterium smegmatis MC2 155 0.01577424 1 LEVO MLIPRKVKHRKQHHPEQRGIASGGTSVSFGDYGIQALEHAYITNRQIESARIAINRHIKRGGKVWINIFPDRPLTKKPAE TRMGSGKGSPEWWVANVKPGRVLFELSYPDEKTARDALTRAIHKLPIKARIVTREEQF A0QSD8 50S ribosomal protein L17 Mycolicibacterium smegmatis MC2 155 0.021892245999999997 1 LEVO MPKPTKGPRLGGSSSHQSALLANLATSLFEHGRIKTTEPKARALRPYAEKLITHAKKGALHNRREVMKKIRDKDVVHTLF AEIGPFYADRNGGYTRIIKVENRKGDNAPMAVIELVREKTVTDEANRARRAAASQAKADERADEKADEKAEETVEETTEA PAEESTEAAAEETVEETTEAPAEESTEAAEESEAKDDTK A0QSL9 50S ribosomal protein L18 Mycolicibacterium smegmatis MC2 155 0.013711727999999998 1 LEVO MAHKPVGQNISEVRRNARLRRHARLRKKVAGTAEVPRLVVNRSARHIHVQLVNDLNGTTLAAASSIEADVRAIDGDKKAH SVRVGQLIAERAKAAGVETVVFDRGGYTYGGRIAALADAAREAGLKF A0QSG5 50S ribosomal protein L19 Mycolicibacterium smegmatis MC2 155 0.012892806 1 LEVO MNTLDFVDQASLRDDIPTFSPGDTVNVHVKVIEGSKERIQVFKGVVIRRQGGGISETFTVRKESYGVGVERTFPVHSPNI DHIDVLTRGDVRRAKLYYLRELRGKKAKIKEKR A0QV42 50S ribosomal protein L20 Mycolicibacterium smegmatis MC2 155 0.014494693 1 LEVO MARVKRALNAQKKRRTVLKASKGYRGQRSRLYRKAKEQQLHSLTYAYRDRRARKGEFRKLWISRINAAARANDITYNRLI QGLKAAGVEVDRKNLAELAVSDPAAFTALVDVARAALPEDVNAPSGEAA A0QYU6 50S ribosomal protein L21 Mycolicibacterium smegmatis MC2 155 0.011055894 1 LEVO MATYAIVKTGGKQYKVAAGDVVKVEKLDSEPGASVSLPVALVVDGANVTSKADDLAKVAVTAEVLEHTKGPKIRIHKFKN KTGYHKRQGHRQQLTVLKVTGIK A0R151 50S ribosomal protein L22 Mycolicibacterium smegmatis MC2 155 0.0163536 1 LEVO MSTVTEFPSATAKARYVRVSATKARRVIDLVRGKSVEEALDILRWAPQAASEPVAKVIASAAANAQNNEGLDPSTLVVAT VYADEGPTAKRIRPRAQGRAFRIRKRTSHITVIVESRPPKQKGASAASARSRRAQGSKAAATKKSAETKEGSE A0QSD6 50S ribosomal protein L23 Mycolicibacterium smegmatis MC2 155 0.011047835999999998 1 LEVO MATITDPRDIILAPVISEKSYGLIEDNVYTFVVHPDSNKTQIKIAIEKIFDVKVDSVNTANRQGKRKRTRTGFGKRKSTK RAIVKLAAGSKPIDLFGAPA A0QSD3 50S ribosomal protein L24 Mycolicibacterium smegmatis MC2 155 0.011228946 1 LEVO MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVMVVDSDGKP TRVGYRIDDETGKKVRIAKTNGKDI A0QSG0 50S ribosomal protein L25 Mycolicibacterium smegmatis MC2 155 0.022571078 1 LEVO MAKTANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARDFAAVLRSHGTNAILTLDIEGTEQLALT KALDVHPIRRNIQHADLLVVQRGEKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEAGTQITAG QISLPEGVNLISDPELLVVNVVEAPSAEALEEEGAGETGAAEAPAEEAPAEEPAE A0R3D2 50S ribosomal protein L27 Mycolicibacterium smegmatis MC2 155 0.009249582 1 LEVO MAHKKGASSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTHFHPGVNVGRGGDDTLFALAPGAVEFGAKRGRKTVNI VPVARPEA A0R150 50S ribosomal protein L28 Mycolicibacterium smegmatis MC2 155 0.006891015999999999 1 LEVO MAAVCDICGKGPGFGKSVSHSHRRTSRRWNPNIQPVRAVTRPGGNKQRINACTSCIKAGKVSRA A0QV03 50S ribosomal protein L29 Mycolicibacterium smegmatis MC2 155 0.008790895 1 LEVO MAVGTTPGELRELTDDELKDKLRESKEELFNLRFQMATGQLSNNRRLRTVRQEIARVYTVLRERELGLASGPAGEES A0QSD9 50S ribosomal protein L30 Mycolicibacterium smegmatis MC2 155 0.007022146999999999 1 LEVO MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVGK A0QSG7 50S ribosomal protein L32 Mycolicibacterium smegmatis MC2 155 0.006467718999999999 1 LEVO MAVPKRRMSRANTRSRRAQWKAEAPGLVTVSVAGQQRKVPRRLLKAARLGLVDLDKR A0R3I9 50S ribosomal protein L33 1 Mycolicibacterium smegmatis MC2 155 0.006468501 1 LEVO MASSTDVRPKITLACEVCKHRNYITKKNRRNDPDRLEIKKFCPNCGTHQPHKESR A0QS39 50S ribosomal protein L34 Mycolicibacterium smegmatis MC2 155 0.00552258 1 LEVO MAKGKRTFQPNNRRRARVHGFRLRMRTRAGRAIVANRRSKGRRALTA A0R7K0 50S ribosomal protein L35 Mycolicibacterium smegmatis MC2 155 0.007298504999999999 1 LEVO MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPTKRTRRLDGRTTVSAADNSRINKLLNG A0QYU7 50S ribosomal protein L36 Mycolicibacterium smegmatis MC2 155 0.004341277 1 LEVO MKVNPSVKPICDKCRVIRRHGRVMVICSDPRHKQRQG A0QSL4 50S ribosomal protein L31 Mycolicibacterium smegmatis MC2 155 0.008312485 1 LEVO MKTGIHPEYVDTTVQCGCGHSFTTRSTKQSGTIVVEVCSQCHPFYTGKQKILDSGGRVARFEKRYGKRNKAAADK A0R215 MAGNESIUM ION 2.4305e-05 407 MG ZINC ION 6.5409e-05 4 ZN singleParticle particle 7.6 Quantifoil R2/2 COPPER 300 CARBON HOLEY ARRAY GLOW DISCHARGE ETHANE 100 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.8 3.3000000000000003 FEI TITAN KRIOS AUTOGRID HOLDER FEI FALCON III (4k x 4k) 54.0 1 5O60 C1 4.1 FSC 0.143 CUT-OFF RELION 3.1 29350 MAXIMUM LIKELIHOOD RELION 3.1 ANGULAR RECONSTITUTION emd_33599.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 483.0 483.0 483.0 90.0 90.0 90.0 Z Y X -0.09313059 0.21231179 0.00014898977 0.008581964 1.38 1.38 1.38 0.03 AUTHOR Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth 5O60 PDB experimental model FLEXIBLE FIT REAL emd_33599_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 483.0 483.0 483.0 90.0 90.0 90.0 Z Y X -0.065298505 0.18837026 0.00021902274 0.0080614025 1.38 1.38 1.38 AUTHOR Mycobacterium smegmatis 50S ribosomal subunit alternative conformation found in Log Phase of growth emd_33599_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 483.0 483.0 483.0 90.0 90.0 90.0 X Y Z -0.045075383 0.16105923 0.00025134545 0.008666986 1.38 1.38 1.38 AUTHOR Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth Half Map 1 emd_33599_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 483.0 483.0 483.0 90.0 90.0 90.0 X Y Z -0.050582893 0.16386673 0.00025143442 0.008653291 1.38 1.38 1.38 AUTHOR Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth Half Map 2