PSII-d1-d2 of PBS-PSII-PSI-LHCs megacomplex from Porphyridium purpureum.

2023-01-18 REL PDBj PDBj PDBj 2022-06-12 2023-01-18 2023-01-18 2023-01-18 Not funded PSII-d1-d2 of PBS-PSII-PSI-LHCs megacomplex from Porphyridium purpureum. You X Zhang X Cheng J Xiao YN Sun S Sui SF You X Zhang X Cheng J Xiao YN Sun S Sui SF Structure of lateral hexamer of PBS-PSII-PSI-LHCs megacomplex at 6.3 Angstroms resolution. To Be Published 0353 EMD-33597 associated EM volume

7y3r FULLOVERLAP Lateral hexamer of PBS Lateral hexamer of PBS 0 1 2 3 Porphyridium purpureum CNT Porphyridium purpureum 0.002292505 4 Porphyridium purpureum LEVO AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA CNT Porphyridium purpureum 0.001652805 4 Porphyridium purpureum LEVO AAAAAAAAAAAAAAAAAAAAAAA CNT Porphyridium purpureum 0.005135611 4 Porphyridium purpureum LEVO AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA Photosystem II protein D1 Porphyridium purpureum 0.038341629 4 Porphyridium purpureum LEVO ASLWERFCSWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFVAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSAAIG IHFYPIWEAASLDEWLYNGGCYPLIVLHFLLGVACYMGREWELSYRLGMRPWIAVAFSAPVAAATAVFLIYPIGQGSFSD GMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANYGYKFGQEEETYNIVA AHGYFGRLIFQYASFNNSRSLHFFLGLWPVVGIWLTSISVSTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEV MHERNAHNFPLDLASGESLPVALTAPAVNG 1.10.3.9 Photosystem II CP47 reaction center protein Porphyridium purpureum 0.056412214999999995 4 Porphyridium purpureum LEVO MGLPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMTRLGVTDSWGGWSI TGESVSNPGIWSFEGVALTHIVLSGLLFLAAIWHWIYWDLELFRDPRTGEPALDLPKIFGIHLLLASILCFGFGAFHVTG LFGPGIWVSDAYGITGKVQPVAPAWGPEGFNPFNPGGVASHHIAAGTVGILAGVFHLSIRPPQRLYRALRMGNIETVLSS SIAAVFFAAFITSGTMWYGCATTPIELFGPTRYQWDSGYFQQEIERQVENSLSEGLSLSDAWSRIPDKLAFYDYIGNNPA KGGLFRSGPMDKGDGIAEAWLGHPVFKDKEGRELTVRRMPAFFETFPVILVDQDGIIRADIPFRRAESKYSIEQVGVTID FYGGKLNGQSFTDAPTVKKYARKAQLGEVFEFDRTTLESDGVFRSSPRGWYTFGHANFALLFFFGHLWHGSRTLFRDVFA GIGAEVTEQVEFGAFAKLGDRTTKKQGIV Photosystem II CP43 reaction center protein Porphyridium purpureum 0.052294605 4 Porphyridium purpureum LEVO NVMKTLYSQRRFCHVETPFNNNVSAAGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWCGAMTLFEVAHFIPE KPLYEQGFILLPHLATLGWGVGPGGEIVDTYPYFVVGVLHLISSAVLGFGGIYHSIIGPDTLEESFPFFGYDWRDKNKMT TILGIHLILLGLGSFLLVAKAMFFGGIYDTWAPGGGDVRYVTNPTLNPAVIFGYVLKSPFGGDGWVVSINNQEDLVGGHV WVGVICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLAALALMGFTASCYAWYNNTAYPSEFYGPTGPEASQAQAFTFL VRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTH APLGSLNSVGGVATEINSVNYVSPRSWLTSSHFFLPFFLFIGHLWHAGRARAAAAGFEKGINRENEPVLFMRPLD Cytochrome b559 subunit beta Porphyridium purpureum 0.005032882999999999 4 Porphyridium purpureum LEVO MTRGNPNQSVTYPIFTFRWLAIHGIAVPTVFFLGAITSMQFIQR PSII_Pbs31 domain-containing protein Porphyridium purpureum 0.022527773 4 Porphyridium purpureum LEVO MAFVNGVVPVAASASVHRRAVCVRMSEQDAALSRRAVLGLAGSAAAALALAAAPISPALADGAVSSATKYRARNLYGSRI FDAAPMIEKLVAAVNAKNWDTVESIVGKKGPLEDLKNSFTLFATGAYPTDKLVQTDLIGNTAVIYEMAGILRKAADQQDQ KKALKAVNELVKSYKEYLAAGELKENPFADAPGQAWSGDFSPLRKTGKSPYIE Photosystem II reaction center protein K Porphyridium purpureum 0.005178225 4 Porphyridium purpureum LEVO MHNHFFLAALPEAYSIFKPLVDILPVIPVFFLLLAFVWQAAIGFR LPP1 Porphyridium purpureum 0.008476257 2 Porphyridium purpureum LEVO AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA Cytochrome c550 Porphyridium purpureum 0.017764377 4 Porphyridium purpureum LEVO MLKKVFWQPVIIGLIVLLSSEYVLAIELDDITRTIPLEASGTTITLTPEQVKRGKRLFNSSCAICHNGGITKTNPNVGLD PESLSLATPPRDNVNSLIDYMKDPTSYDGSESIAEIHPSIKSADIFPKMRSLSDDDLFAIAGHILIQPKVASEKWGGGKI YY Psb34 Porphyridium purpureum 0.0019371159999999998 2 Porphyridium purpureum LEVO AAAAAAAAAAAAAAAAAAAAAAAAAAA Psb34 Porphyridium purpureum 0.0020792719999999996 2 Porphyridium purpureum LEVO AAAAAAAAAAAAAAAAAAAAAAAAAAAAA Oxygen-evolving enhancer protein Porphyridium purpureum 0.030890065999999997 4 Porphyridium purpureum LEVO MEVVGKDSKAKSALAALAVSAAVMGTQMTPVQAFTEEDFRQLSYEQVKGTGLANRCPEVDGTKGSIKIEKGKKYKIVDMC IEPKSFQVEDEVGKGKQARKEFVDTKLMTRATYTLTGIEGPLTVNANGDLEFQEKDGIDYAATTVQLPGGERVPFLFTVK ELVATAKGDSIGSGTEFGGEFTVPSYRTGLFLDPKGRGGVTGYDMAVALPGMMADGAEGQDELFKETNKVFQVTKGEIEM GVQKVDPSTNEIAGVFVSEQLTDTDMGAKAPKNILLKGVFYARIVEE Photosystem II reaction center protein T Porphyridium purpureum 0.003579424 4 Porphyridium purpureum LEVO MEALVYVFLLVGTLMVIFFAVFFRDPPKIAK PS II complex 12 kDa extrinsic protein Porphyridium purpureum 0.016382673 4 Porphyridium purpureum LEVO MAFVGASVMGAQTRRSQSTCGVRMSMNADDAQVSRRQMLSVAAAAVAAFGVARGANAEMEYEGVMYLGGSDKIDVNNANI RAYTKYPGMYPNIAREIVKNGPFESVDDVLKIETLTATQKSVVEKYKNNLIALPSRPEYVIDKLNNGLYR Photosystem II D2 protein Porphyridium purpureum 0.039253891 4 Porphyridium purpureum LEVO MTIAIGQEKGRGWFDLIDDWLKRDRFVFIGWSGLLLLPCSYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTP ANSMGHSLLFLWGPEAQGDFTRWCQIGGLWTFIALHGAFGLIGFCLRQFEIARLVGLRPYNAIAFSGPISVFVSVFLMYP LGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAADTFRAFTPTQSE ETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSSIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILL NEGIRAWMAAQDQPHENFIFPEEVLPRGNAL 1.10.3.9 Photosystem II reaction center protein H Porphyridium purpureum 0.0075769389999999995 4 Porphyridium purpureum LEVO MALRTRLGEILRPLNSEYGKVAPGWGTTPIMGVFMLLFFLFLLIILQIYNSSLIIENVDVDWTSLGN Photosystem II reaction center protein I Porphyridium purpureum 0.004522269 4 Porphyridium purpureum LEVO MFTLKIFVYTTVIFFISLFVFGFLSNDPSRNPNRKDLE Photosystem II reaction center protein J Porphyridium purpureum 0.003944665 4 Porphyridium purpureum LEVO MATTGRVPIWLVAFVGGIAVIGLLGLFIYGSYSGVGSSL Photosystem II reaction center protein L Porphyridium purpureum 0.004420138 4 Porphyridium purpureum LEVO MSNPNPNKQPVELNRTSLFWGLLLIFVLAVLFSSYFFN PsbM Porphyridium purpureum 0.010463041999999999 4 Porphyridium purpureum LEVO MYGFVSGSPISARVNQNNRLAVASKRAAVAVPAGSRKVAMNFDLGATSNNMVLLAEGGGMSVSFPAYLAVLLGTFVPVAF LVILYIQSEARKAGASSKSDE Photosystem II reaction center protein Ycf12 Porphyridium purpureum 0.0036815619999999998 4 Porphyridium purpureum LEVO MINWQVIGQLVSLAIIVLVGPAVIFLLAFKKGNL Photosystem II reaction center X protein Porphyridium purpureum 0.004147984 4 Porphyridium purpureum LEVO MTPSLSSFINSLILGLVIVVIPISGALLFVSQKDKVTRS Photosystem II reaction center protein Z Porphyridium purpureum 0.006500705 4 Porphyridium purpureum LEVO MVTALQILVFALTILSTILVVSIPVILASPGQWEQSKNLVFTGAGVWSGLVIVTGLLNSFAT Photosystem II protein Y Porphyridium purpureum 0.0037274899999999995 4 Porphyridium purpureum LEVO DTRLLIVLLPVLAAASWALYNIGRVALQQFKRL PsbQ' Porphyridium purpureum 0.022397451 4 Porphyridium purpureum LEVO MAFVSGFAGAQIASGSSAQVCRAPAAVRMSAAGEEMSRRDLMAGVATAAAGLLVIPGAAMAGDAPKQSFFGGSSASSPFV YNMKQTGEILYKPLNDEDLQFHKNVLEKSRGELDRTSEQIARKSWDDMRGVIRNQMYNMRHSQLRLIESVESAEKQKAAK KNYNDLKKSLEEMDLAARNKKQEDARKFRASALKAFDSFTTSVGI Cytochrome b559 subunit alpha Porphyridium purpureum 0.009477639999999999 4 Porphyridium purpureum LEVO MSGGSTGERPFSDIITSIRYWVIHSITIPSLFVAGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDL TKGL Photosystem II reaction center Psb28 protein Porphyridium purpureum 0.012850427999999999 4 Porphyridium purpureum LEVO MAVIQFIPGLNETVIPEVKLTRSRDGNTGTATFRFTNPNVLDISTSKEGDITGMYLDDEEGQLITRDVNAKFVNGRPQAI EAVYVIRSPEDWDRFMRFMERYANANGLTFTKAA 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 30 LHG BETA-CAROTENE 0.000536873 40 BCR CHLORIDE ION 3.5453e-05 4 CL CHLOROPHYLL A 0.000893489 140 CLA CA-MN4-O5 CLUSTER 0.00033982699999999996 4 OEX FE (III) ION 5.5845e-05 4 FE PHEOPHYTIN A 0.0008712 8 PHO 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE 0.000749201 8 PL9 DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 36 DGD 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 0.0007871579999999999 40 LMG PROTOPORPHYRIN IX CONTAINING FE 0.000616487 8 HEM BICARBONATE ION 6.1017e-05 4 BCT GLYCEROL 9.209399999999999e-05 4 GOL water 1.8015e-05 4 HOH singleParticle cell 7.0 ETHANE FEI TITAN KRIOS SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 300 1.0 6.0 GATAN K3 (6k x 4k) 35.0 1 6KGX 3.2 FSC 0.143 CUT-OFF 321000 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_33597.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 417.79202 417.79202 417.79202 90.0 90.0 90.0 X Y Z -0.74992794 1.0320665 0.0005404581 0.041370396 1.088 1.088 1.088 0.15 AUTHOR 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