PSI-LHCs of PBS-PSII-PSI-LHCs from Porphyridium purpureum.

2023-01-18 REL PDBj PDBj PDBj 2022-06-08 2023-01-18 2023-01-18 2023-01-18 Not funded PSI-LHCs of PBS-PSII-PSI-LHCs from Porphyridium purpureum. You X Zhang X Cheng J Xiao YN Sun S Sui SF You X Zhang X Cheng J Xiao YN Sun S Sui SF Structure of lateral hexamer of PBS-PSII-PSI-LHCs megacomplex at 6.3 Angstroms resolution. To Be Published 0353 EMD-33561 associated EM volume

7y1e FULLOVERLAP Lateral hexamer of PBS Lateral hexamer of PBS 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 Porphyridium purpureum Chlorophyll a-b binding protein, chloroplastic Porphyridium purpureum 0.024109686 1 Porphyridium purpureum LEVO MAAAFVSGAGAALGRVNKVAAIQSKSVKAAVPVKAGRIAMMAEMSKSIPFLEKPKNLDGSMAGDVGFDPLGFSDKWDVKF LREAELKHGRICMLAALGFIYPEIMGGKSIPSPEGYFTELNPLKAVKTIPTAGLLQIVLFVMVLEAISWNKVFMDKTSAP GDFKFDPLGLKSPKMELSEVKNGRLAMIAVGGMIHQVLLTKQPILAQLKNGPYLPKESMFPIW Chlorophyll a-b binding protein of LHCII type III, chloroplastic Porphyridium purpureum 0.021795395999999998 1 Porphyridium purpureum LEVO MAAFVSGFGLARASAGRSSVCSKNAHVTMMAKSKAIPFLEAPAKLDGTLVGDVGFDPLGLSATLDVKYLRAAELKHGRIA MLAALGFVVQEILAPKQSGPFTEPDPFLAIYKVPVEGWYQIIAAISLVELVTFKENYDGSAEPGNFGFDPLGLGKDKSVF DKYALSELKNGRLAMIAWTAFAIQQIVTGKGVIKQLMEFQPLM Chlorophyll a-b binding protein, chloroplastic Porphyridium purpureum 0.023179254 1 Porphyridium purpureum LEVO MICKMAAAFVSGVGLARASVGRAAVCTKNVQVSMMAKSKSVPFMDAPPALDGSLAGDVGFDPLNISGFLNIKWLRESELK HGRICMLAALGMIVQEVYRFPFYQGAPAVATEAHDYFAKWNGPLGQVLIFASFFEIMTTPAVIQMITGESDRAPGYFAFD PLGLGKNPDARKRFEVSELKNGRLAMIAVGGMVHQMWLTKMGIIGQLQAGKFMP Chlorophyll a-b binding protein 1B-21, chloroplastic Porphyridium purpureum 0.023102138999999997 1 Porphyridium purpureum LEVO MSAAFVSGLGLAQARVVRRSVCSSVAAAPMKMVTSKSMPFMEAPPALDGSMVGDVGFDPLGFTRTFDVKWMREAELKHCR ICMLAVLGFVVQEIFRLPMYSGAPKLATDAHDYFVSQGALKQILLFISFFEVFGTVALWETMQGTREPGVFGFDPLNLGK NPASYEKYALSELKNGRLAMIAVGGFIHQMWVYKQGVLYQLAHFKPMSL Chlorophyll a-b binding protein 1B-21, chloroplastic Porphyridium purpureum 0.022816655999999998 1 Porphyridium purpureum LEVO MAFVSGVGSGLSQSRVAQRSVCKANGAALKMEGKSASVPFLTKPEKLDGSMAGDVGFDPLGFSNYLSLEYLRESEIKHGR VAMLACLGIWIQEIVHLPGKEFSNPLATEAFFQVPAGGIAQIFLACGLAEFIGHRGKMTYMDIAADKERKPGAMGFDPLN MSKGKSAEAMKKLELNEVKNGRLAMIGVGGLIHAMFISHQPTLFQLAHFKPL Chlorophyll a-b binding protein 1B-21, chloroplastic Porphyridium purpureum 0.02360559 1 Porphyridium purpureum LEVO MDGKVNKMAAFVSSLGLARASVGRGAVCTKPGSAQLSMMAKSKSVPFMEAPAALDGSMVGDVGFDPLGFSNYIDLKFLRE AELKHCRICMLAALGIIVQEVYQFPFYSGAPRLATDAHDYFVKFGSLNQILLFASFIELVAGTPGIIQTMRGETDRAPGY FAFDPLGLGKDKAKFERYQLSELKNGRLAMIAVGGFIHQAWMAKVPVLEQLSTGKLLP Fucoxanthin-chlorophyll a-c binding protein, chloroplastic Porphyridium purpureum 0.022208759999999998 1 Porphyridium purpureum LEVO MAAFVSGFSGLAVRAHTSRASCAAVRMAASPMSKSVPFLKKPTQLDGWAGSAEFDPIGISEYVDIRYLRESELKHGRICM LAAVGLIVQELVTFGGKYFPKMLPVQAHDFYLGGMSQLLLFIAAFESLSYFAIRETLEGKREPGDFGFDPLNLGKEPAAF AKFRESELKNGRLAMIAVGGMIHQQWVSGQGTLEQLFHFKPL RedCAP Porphyridium purpureum 0.036156082 1 Porphyridium purpureum LEVO MYGFVSTAGGVSGAGVRPVGAASKLAARAVSVPAKRASLRMGVFEKAMSDFKSDFPQFAKKGWGVTVKSERWNGRHAMAG WLIIWITAYMKGHGMLPSGILEPSVWGPLAQLGGYEPIPRERAVVLIANVHLLLVSVAATIAPFSFQDKLLLDEGESDEA PAGLIPSFKLGLTKEAELWNGRLAMLGLIVIVFASVSSGTSILDLTNQMFGNASQIGSARLVADVWKSAPLLPQPQKSSR RPVFCENPLWRRAQEGEKTPTEATKWQTRSPWTGLGTVICASSFPKPFDTCITVAKWRCVIAFVLRHHFGEQMIFAQTMR LRTGFIPMPCAQ Photosystem I P700 chlorophyll a apoprotein A1 Porphyridium purpureum 0.08331167999999999 1 Porphyridium purpureum LEVO MTTSSKEQEAKKVRITVDKDPVETSFEKWAKPGHFSRTLAKGPKTTTWIWNLHADAHDFDGHTSSLEDVSRKIFSAHFGQ LSVIFLWLSGMYFHGARFSNYVAWLSNPTAIKPSAQVVWPIVGQDILNGDVGGGFQGVQITSGFFQLWRASGITNEKQLY ATAIGGLVMSALMLFAGWFHYHKAAPKLEWFQNVESMMNHHLAGLLGLGCLSWAGHQIHVSLPINKLLDAGVAPSEIPLP HEFIVNRELMAQLYPSFSKGLTPFFTLDWNAYSDFLTFKGGLNPITGGLWLSDTAHHHLALAVLFIVAGHMYRTNWGIGH SMKEILEAHKGPFTGEGHKGLYEILTTSWHAQLAINLAMIGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGF CVTGAAAHGAIFMVRDYSPAQNYNNLLDRMIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSQDMFSDTAIQLQ PIFAQWIQSIHTLAPGNTAPNALAATSYAFGGDIVAVNGKIAMMPIALGTADFMVHHIHAFTIHVTVLILLKGVLFARNS RLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSIVIFHFSWKMQSDVWGSVTPNGAVSHITGGNFAQSA ITINGWLRDFLWAQASQVIQSYGSALSAYGLIFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKLGPAIQPRALS ITQGRAVGLAHYLVGGIGTTWAFFLARIIAVG 1.97.1.12 Photosystem I P700 chlorophyll a apoprotein A2 Porphyridium purpureum 0.08225785199999999 1 Porphyridium purpureum LEVO MATKFPKFSQALAQDPSTRRIWFGIATSHDFESHDGMTEENLYQKIFASHFGHLAIIFLWTSGNLFHVAWQGNFEQWVLN PLKTKPIAHAIWDPHFGQPAIKAFTKGGVTYPVDIAYSGVYHWWYTIGMRTNNDLYSGALFLLVLSAVFLFAGWLHLQPR FKPSLSWFKNNESRLNHHLSGLFGVSSLAWTGHMIHVAIPESRGQHIGWDNFTTVRPHPAGLEPFFSGNWSVYAQNPDTP NHIFGTSEGAGTAILTFLGGFHPQTQSLWLTDMAHHHLAIAVVFIVAGHMYRTNWGIGHSLKEILEAHEPPSGRLGKGHK GLFETITNSLHMQLGLALASLGVITSLVAQHMYALPPYAFMAKDFTTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDA EQNEGNVLARMLEHKEAIISHLSWVSLFLGFHTLGLYIHNDVVVAFGTPEKQILVEPVFAQWIQAASGKALYGFDVLLSS SNSVATQAGGNIWLPGWLEAINSGKNSLFLTIGPGDFLVHHAIALGLHTTALILIKGALDARGSKLMPDKKDFGYSFPCD GPGRGGTCDISAWDAFYLSVFWMLNTIGWVTFYWHWKHVTIWQGNVAQFNESSTYLMGWLRDYLWLNSSPLINGYNPYGM NSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYILT YAAFVIASTTGKFG 1.97.1.12 Photosystem I reaction center subunit II Porphyridium purpureum 0.015851997 1 Porphyridium purpureum LEVO MSETINLQMPSPTFGGSTGGWLRAAETEEKYAITWTGKKEEIFEIPTGGAAIMREGDNLLYLARKEQCLALGTQLRNSFK ISDYKIYRIFPTGEVQYLHPKDGVFPEKVNEGRVGINNVSRNIGKNPNPISVKFTGKSTFEV Photosystem I reaction center subunit IV Porphyridium purpureum 0.0070089440000000005 1 Porphyridium purpureum LEVO MIKRGSKVRVLRKESYWYQEIGTVATVDTSGIRYPVVVRFEKVNYSGVNTNNFAESELIEA Photosystem I reaction center subunit III Porphyridium purpureum 0.020753357 1 Porphyridium purpureum LEVO MKRSLLIIFLVISLVMFDSQQAKADVAGLVPCKDSKEFSRRLDLSVKKLEQRLKKYEPGTPPYLAIQKSIETTKIRFDRY AKGGLLCGKDGLPHLITDGRLSHATEFIIPGLLFLYINGWIGWVGRAYLIAIRSSDKPAEKEIILDIPLALGFMSSGFLW PLSAWKEFTSGELLVDANEVTVSPR Photosystem I reaction center subunit IX Porphyridium purpureum 0.004832742 1 Porphyridium purpureum LEVO MENNFLKYLSVMPVAGTIFMIFTAGLVIEVNRFYPDALFFPL Photosystem I reaction center subunit PsaK Porphyridium purpureum 0.006992322 1 Porphyridium purpureum LEVO MVNSSKAGIMLIANVLSIMIGRYAIQVRGLGPSIPLGVEGFGLPELIATTSLGHIIGAGAILGLSSIGSI Photosystem I reaction center subunit XI Porphyridium purpureum 0.015344557 1 Porphyridium purpureum LEVO MTDFISPYNEDPFVGNLSTPINTSSFTKGLLSNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFYKLGPLRSTDVALLSGFL STVGLILILTTCLSIYGSVSFDKEDTKDSLQTSEGWGQFTAGFLVGAVGGSGFAYLLLANLPIA Photosystem I reaction center subunit XII Porphyridium purpureum 0.0031878569999999997 1 Porphyridium purpureum LEVO MVNDTQILIALLIALISGVLAIRLGTSLYT Ferredoxin Porphyridium purpureum 0.010590564 1 Porphyridium purpureum LEVO MATYKVRLLSEAEGIDVTIDCADDVYILDAAEEQGVDLPYSCRAGACSTCAGKVSEGTIDQSDQSFLDDDQTGAGFVLTC VAYPTSDCTILTHQEESLY Photosystem I subunit O Porphyridium purpureum 0.014977179 1 Porphyridium purpureum LEVO MAAFVNAAAGSLTASRVSARRVVGAHQRSVHAPRSQRAVLKMQDGYEISEGSSFDANPLVIGLALIGWVVPSSVPSNIPL LDGKGLTPAFVASISDNLSRWPQGPQLADPFWLLMGMWHVGLFATLIFGTVGYNLRKGNY PsaR Porphyridium purpureum 0.01245658 1 Porphyridium purpureum LEVO MAFINGAALGGGAKVAFSGKAVASRRVVAASTANKRSVVVKMADNYPSSEVLGLGKNIPSALYVLISIACFAIGVTSVAK SNLITPLTPESINPQYVVGSLLLPISWGAHTAAFIQKVNKK LPS1 Porphyridium purpureum 0.005634938 1 Porphyridium purpureum LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK) Photosystem I iron-sulfur center Porphyridium purpureum 0.008807258 1 Porphyridium purpureum LEVO MAHSVKVYDTCIGCTQCVRACPCDVLEMVPWDGCKAKQIASAPRTEDCIGCKRCETACPTDFLSVRVYLGGETTRSLGLA Y 1.97.1.12 Photosystem I reaction center subunit VIII Porphyridium purpureum 0.003519346 1 Porphyridium purpureum LEVO MTAAYLPPILVPLVGLIFPAISMALLFIYIEQ Cytochrome c6 Porphyridium purpureum 0.011033478999999999 1 Porphyridium purpureum LEVO MIAIAMITSFCLFTTNVFAADIEHGEQIFTANCSACHAGGNNVIMPEKTLKKDALEANGMNSVSAITNQVTNGKNAMPAF GGRLADNDIEDVANYVLAQSVKGW CHLOROPHYLL A 0.000893489 187 CLA beta-D-glucopyranose 0.000180156 1 BGC (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol 0.000568871 2 ZEX PHYLLOQUINONE 0.000450696 2 PQN 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 2 LHG BETA-CAROTENE 0.000536873 21 BCR IRON/SULFUR CLUSTER 0.00035163999999999996 3 SF4 DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 1 DGD (2S)-2,3-dihydroxypropyl octadecanoate 0.00035855599999999995 1 3XQ PROLINE 0.00011512999999999999 1 PRO FE2/S2 (INORGANIC) CLUSTER 0.00017581999999999998 1 FES PROTOPORPHYRIN IX CONTAINING FE 0.000616487 1 HEM singleParticle cell 7.0 ETHANE FEI TITAN KRIOS SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 300 1.0 6.0 GATAN K3 (6k x 4k) 35.0 1 6KGX 3.6 FSC 0.143 CUT-OFF 112000 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_33561.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 417.792 417.792 417.792 90.0 90.0 90.0 X Y Z -1.11904 2.625814 -0.00022995572 0.059641745 1.632 1.632 1.632 0.2 AUTHOR ::::EMDATABANK.org::::EMD-33561:::: emd_33561_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 417.792 417.792 417.792 90.0 90.0 90.0 X Y Z -0.7900576 1.7513291 0.00042122256 0.08218825 1.632 1.632 1.632 AUTHOR ::::EMDATABANK.org::::EMD-33561:::: emd_33561_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 417.792 417.792 417.792 90.0 90.0 90.0 X Y Z -0.76181585 1.7243772 0.0003997595 0.08219129 1.632 1.632 1.632 AUTHOR ::::EMDATABANK.org::::EMD-33561::::