REL PDBe PDBe PDBe 2016-02-07 2016-02-17 2016-04-13 2016-04-13 Cryo electron microscopy of a complex of Tor and Lst8 Baretic D Berndt A Ohashi Y Johnson CM Williams RL cryo-EM, Tor, Lst8, mTOR, kinase, PIKK, S/T protein kinase, TORC1, mTORC1 Baretic D Berndt A Ohashi Y Johnson CM Williams RL Tor forms a dimer through an N-terminal helical solenoid with a complex topology NAT.COMMUN. 2016 doi:10.1038/NCOMMS11016 5fvm FULLOVERLAP Complex of Tor1 with Lst8 Complex of Tor1 with Lst8 Dimer of Tor1/Lst8 heterodimers 2 0.622 Target of rapamycin (Tor) Kluyveromyces marxianus 0.277 2 dimer true Kluyveromyces marxianus GO:0031931 Lst8 Kluyveromyces marxianus 0.034 2 true Kluyveromyces marxianus singleParticle particle 2.5 7.4
50 mM Hepes pH 7.4 (23 deg C), 75 mM KCl, 250 mM NaCl, 0.3 % (v/v) CHAPS, 1 mM TCEP
Quantifoil Au R 0.6/1.0 or Au R 1.2/1.3, 300 mesh grids, blotted for 11-13 s at 4 deg C
 ETHANE OTHER 11-13 s at 4 deg C FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 2.5 3.5 47000.0 105263.0 FEI TITAN KRIOS AUTOGRID HOLDER 2015-05-16 FEI FALCON II (4k x 4k) 2332 40
Processed with RELION. CTF corrected each particle.
Each particle (Gctf)
 C2 6.1 OTHER RELION 28877
RELION
 emd_3329.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 425.6 425.6 425.6 90.0 90.0 90.0 X Y Z -0.10712637 0.282323 0.0000071 0.01094501 1.33 1.33 1.33 0.044 AUTHOR volume for dimer of Tor/Lst8 heterodimers
::::EMDATABANK.org::::EMD-3329::::
 4JSV A B FLEXIBLE FIT Chimera
An initial model for the FATKIN was derived from 4JSV. A poly-ALA model was built into the remaining density (about half of the total). The full model was refined by Phenix real space, global minimization, 2-fold NCS, one B-factor per residue, secondary structure rstraints, ramachandran restraints
correlation REAL 4JSV C D FLEXIBLE FIT Chimera
An initial model for the Lst8 was derived from 4JSV. A poly-ALA model was adjusted to the density. The full model was refined by Phenix real space, global minimization, 2-fold NCS, one B-factor per residue, secondary structure rstraints, ramachandran restraints
correlation REAL emd_3329_fsc.xml