REL PDBe PDBe PDBe 2016-02-01 2016-03-09 2016-08-10 2016-08-24 Multiple capsid-stabilizing interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis Shakeel S Westerhuis BM Domanska A Koning RI Matadeen R Koster AJ Bakker AQ Beaumont T Wolthers KC Butcher SJ asymmetric reconstruction, HPeV3, parechovirus, picornavirus, single particle anaylsis, human parechovirus, neonatal sepsis, cryoEM, image processing Shakeel S Westerhuis BM Domanska A Koning RI Matadeen R Koster AJ Bakker AQ Beaumont T Wolthers KC Butcher SJ Multiple capsid-stabilizing interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis NAT.COMMUN. 7 11387 2016 27435188 doi:10.1038/ncomms11387 Human parechovirus 3 virions Human parechovirus 3 virions
The sample was monodisperse
1 Human parechovirus 3 Human parechovirus 3 Homo sapiens VERTEBRATES Chlorocebus aethiops African green monkey Vero 280 VIRION OTHER false false HPeV3 singleParticle particle 1 7.5
10mM Tris-HCl, 150mM NaCl, 1mM MgCl2
 NEGATIVE
unstained sample
Quantifoil holey carbon on copper grids
 ETHANE LEICA EM GP Blot for 2 sec on one side before plunging. FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.01 0.42 2.34 59000.0 FEI TITAN KRIOS AUTOGRID HOLDER 80 95 87 Done as part of Cs corector routine.
Cs corrector was used during imaging.
2014-01-21 FEI FALCON II (4k x 4k) 6604 36
Total number of images used in the reconstruction were 1028.
 Liquid nitrogen cooled.
The movie frames were aligned initially by motion_corr. CTF deteremined using CTFFIND3. Particles picked using Ethan. 2D and 3D classification (with icosahedral symmetry imposed) done in Relion. Final reconstruction in Relion.
Each micrograph
 C1 OTHER 10.36 OTHER Ethan, CTFFIND3, Eman1, Eman2, Auto3DEM, Relion, ResMap 41845 emd_3322.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 -199 -199 -199 400 400 400 456.0 456.0 456.0 90.0 90.0 90.0 X Y Z -0.01699336 0.02527472 0.00139845 0.00581582 1.14 1.14 1.14 0.006 AUTHOR Asymmetric reconstruction of human parechovirus 3 (HPeV3).
::::EMDATABANK.org::::EMD-3322::::
emd_3322.tif
emd_3322_fsc.xml