REL PDBe PDBe PDBe 2016-01-09 2016-01-20 2016-02-17 2016-02-17 Sub-tomogram averaging of Lassa virus glycoprotein spike from virus-like particles at pH 5 in complex with purified LAMP1 fragment Li S Zhaoyang S Pryce R Parsy M-L Fehling SK Schlie K Siebert CA Garten W Bowden TA Strecker T Huiskonen JT lassa virus, membrane protein, glycoprotein, receptor binding, membrane fusion, lysosome-associated membrane protein 1, LAMP1, receptor, complex Li S Sun Z Pryce R Parsy ML Fehling SK Schlie K Siebert CA Garten W Bowden TA Strecker T Huiskonen JT Acidic pH-Induced Conformations and LAMP1 Binding of the Lassa Virus Glycoprotein Spike. PLOS PATHOG. 12 e1005418 e1005418 2016 26849049 doi:10.1371/journal.ppat.1005418 Purified Lassa virus VLPs at pH 5 mixed with purified fragment of LAMP1 Purified Lassa virus VLPs at pH 5 mixed with purified fragment of LAMP1
Unfixed virus-like particles
2 Lassa virus Lassa virus Josiah Mastomys VERTEBRATES Canis lupus Madin-Darby canine kidney VIRUS-LIKE PARTICLE STRAIN true false Lassa mammarenavirus lysosome-associated membrane glycoprotein 1 Homo sapiens Human Lysosome 3 monomer true Homo sapiens HEK293T P11279 subtomogramAveraging particle 5.5
50 mM buffer of succinic acid, dihydrogen phosphate and glycine (2:7:7)
Grids (Cflat CF-2/1-2C-T) were glow-discharged for 15 s. 6-nm gold particles were added.
 ETHANE-PROPANE MIXTURE 80 120 GATAN CRYOPLUNGE 3 Blot for 3 seconds before plunging. FEI POLARA 300 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.0 1.4 4.6 160000.0 37037.0 OTHER 80 120 Objective lens astigmatism was corrected at 160,000 times magnification. GIF QUANTUM LS 0.0 20.0
Super-resolution counting mode
2015-09-25 GATAN K2 SUMMIT (4k x 4k) 5 30 60
Each image is a tilt series of 19 movies, acquired at 5 degree intervals. Each movie consists of 8 frames.
 Liquid nitrogen cooled -45 45
Subtomograms were picked manually. No C3 symmetry was imposed in the initial stages of refinement.
C3 OTHER 14.8 OTHER IMOD, Dynamo 2764
Each tilted image
 1 emd_3293.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 345.6 345.6 345.6 90.0 90.0 90.0 X Y Z -3.91460943 3.80016589 -0.03996465 0.4378463 2.7 2.7 2.7 1.0 AUTHOR Sub-tomogram average of the glycoprotein spike trimer-receptor fragment complex
::::EMDATABANK.org::::EMD-3293::::
emd_3293.tif
emd_3293_fsc.xml