<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3288" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-12-23</deposition>
         <header_release>2016-01-27</header_release>
         <map_release>2016-01-27</map_release>
         <update>2016-05-18</update>
      </key_dates>
      <title>HSV bubblegram imaging</title>
      <authors_list>
         <author>Wu W</author>
         <author>Newcomb WW</author>
         <author>Cheng N</author>
         <author>Aksyuk A</author>
         <author>Winkler DC</author>
         <author>Steven AC</author>
      </authors_list>
      <keywords>HSV, Herpes Simplex Virus, Bubblegram, Radiation Damage, C-capsid</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Wu W</author>
               <author order="2">Newcomb WW</author>
               <author order="3">Cheng N</author>
               <author order="4">Aksyuk A</author>
               <author order="5">Winkler DC</author>
               <author order="6">Steven AC</author>
               <title>Internal Proteins of the Procapsid and Mature Capsids of Herpes Simplex Virus Type 1 Mapped by Bubblegram Imaging</title>
               <journal>J.VIROL.</journal>
               <volume>90</volume>
               <first_page>5176</first_page>
               <last_page>5186</last_page>
               <year>2016</year>
               <external_references type="PUBMED">26984725</external_references>
               <external_references type="DOI">doi:10.1128/jvi.03224-15</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Herpes Simplex Virus Type 1</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Herpes Simplex Virus Type 1</name>
            <number_unique_components>1</number_unique_components>
         </sample_supramolecule>
         <virus_supramolecule supramolecule_id="1">
            <name>Human herpesvirus 1</name>
            <sci_species_name ncbi="10298">Human herpesvirus 1</sci_species_name>
            <sci_species_strain>HSV-1</sci_species_strain>
            <natural_host database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>VERTEBRATES</synonym_organism>
            </natural_host>
            <host_system database="NCBI">
               <recombinant_organism ncbi="10029">Cricetulus griseus</recombinant_organism>
               <recombinant_strain>17MP</recombinant_strain>
               <recombinant_cell>BHK-21</recombinant_cell>
            </host_system>
            <virus_type>VIRION</virus_type>
            <virus_isolate>STRAIN</virus_isolate>
            <virus_enveloped>false</virus_enveloped>
            <virus_empty>false</virus_empty>
         </virus_supramolecule>
      </supramolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <vitrification>
                  <cryogen_name>NITROGEN</cryogen_name>
                  <instrument>LEICA EM GP</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI/PHILIPS CM200FEG</microscope>
               <illumination_mode>SPOT SCAN</illumination_mode>
               <imaging_mode>DARK FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">120</acceleration_voltage>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <date>2014-05-12</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>NIKON SUPER COOLSCAN 9000</scanner>
                        <sampling_interval units="&#181;m">6.35</sampling_interval>
                     </digitization_details>
                     <number_real_images>18</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">15</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>average of particles</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>I</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">25.0</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>EMAN</name>
                  </software>
               </software_list>
               <details>We are not aiming at resolution.</details>
               <number_images_used>235</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="54001">
      <file>emd_3288.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>240</col>
         <row>240</row>
         <sec>240</sec>
      </dimensions>
      <origin>
         <col>-120</col>
         <row>-120</row>
         <sec>-120</sec>
      </origin>
      <spacing>
         <x>240</x>
         <y>240</y>
         <z>240</z>
      </spacing>
      <cell>
         <a units="&#8491;">1604.16</a>
         <b units="&#8491;">1604.16</b>
         <c units="&#8491;">1604.16</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-34152.765625</minimum>
         <maximum>39301.78515625</maximum>
         <average>-390.348907469999972</average>
         <std>7016.496582030000354</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">6.684</x>
         <y units="&#8491;">6.684</y>
         <z units="&#8491;">6.684</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>6691.0</level>
            <source>EMDB</source>
         </contour>
      </contour_list>
      <annotation_details>HSV 1st exposure</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3288::::</details>
   </map>
</emd>