<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3287" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-12-17</deposition>
         <header_release>2016-02-10</header_release>
         <map_release>2017-05-31</map_release>
         <update>2017-05-31</update>
      </key_dates>
      <title>Evidence for a conformational switch in Influenzavirus M1 and its role in filamentous virion architecture</title>
      <authors_list>
         <author>Kiss G</author>
         <author>Abdulsattar BO</author>
         <author>Phapugrangkul P</author>
         <author>Birch K</author>
         <author>Jones IM</author>
         <author>Neuman BW</author>
      </authors_list>
      <keywords>Influenza A virus, FLUAV, polymerase, M1, crown, leading tip, trailing tip, filamentous</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="false">
               <author order="1">Kiss G</author>
               <author order="2">Abdulsattar BO</author>
               <author order="3">Phapugrangkul P</author>
               <author order="4">Birch K</author>
               <author order="5">Jones IM</author>
               <author order="6">Neuman BW</author>
               <title>Evidence for a conformational switch in Influenzavirus M1 and its role in filamentous virion architecture</title>
               <journal>To Be Published</journal>
            </journal_citation>
         </primary_citation>
         <secondary_citation>
            <journal_citation published="true">
               <author order="1">Calder LJ</author>
               <author order="2">Wasilewski S</author>
               <author order="3">Berriman JA</author>
               <author order="4">Rosenthal PB</author>
               <title>Structural organization of a filamentous influenza A virus.</title>
               <journal>PROC.NATL.ACAD.SCI.USA</journal>
               <volume>107</volume>
               <first_page>10685</first_page>
               <last_page>10690</last_page>
               <year>2010</year>
               <external_references type="PUBMED">20498070</external_references>
               <external_references type="DOI">doi:10.1073/pnas.1002123107</external_references>
            </journal_citation>
         </secondary_citation>
      </citation_list>
      <auxiliary_link_list>
         <auxiliary_link>
            <link>https://cryoem.nimr.mrc.ac.uk/recent-projects/</link>
         </auxiliary_link>
      </auxiliary_link_list>
   </crossreferences>
   <sample>
      <name>Trailing tips of filamentous influenza A virions, showing M1 and parts of the viral ribonucleoprotein</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Trailing tips of filamentous influenza A virions, showing M1 and parts of the viral ribonucleoprotein</name>
            <number_unique_components>1</number_unique_components>
         </sample_supramolecule>
         <virus_supramolecule supramolecule_id="1">
            <name synonym="Influenza virus">Influenza A virus</name>
            <details>Reconstruction of the inner layer of the viral envelope from trailing tips of native virions of mixed A/Aichi/X31 and A/Udorn strains. Map is Gaussian filtered to 7.6 nm the 0.5 FSC. Reconstructed in EMAN2.</details>
            <sci_species_name ncbi="11320">Influenza A virus</sci_species_name>
            <natural_host database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <strain>Combined A/Aichi/2/68 and A/Udorn/307/72</strain>
               <synonym_organism>VERTEBRATES</synonym_organism>
            </natural_host>
            <host_system database="NCBI">
               <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
               <recombinant_cell>MDCK</recombinant_cell>
            </host_system>
            <virus_shell shell_id="1">
               <name>M1</name>
            </virus_shell>
            <virus_type>VIRION</virus_type>
            <virus_isolate>OTHER</virus_isolate>
            <virus_enveloped>true</virus_enveloped>
            <virus_empty>false</virus_empty>
            <syn_species_name>Influenza virus</syn_species_name>
         </virus_supramolecule>
      </supramolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>subtomogramAveraging</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <subtomogram_averaging_preparation preparation_id="1">
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">90</chamber_humidity>
                  <instrument>FEI VITROBOT MARK III</instrument>
                  <details>Details for EM and reconstruction published in Calder et al., Proc Natl Acad Sci U S A. 2010 Jun 8; 107(23): 10685 to 10690.</details>
                  <method>Blotted 4s before plunging</method>
               </vitrification>
            </subtomogram_averaging_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <subtomogram_averaging_microscopy microscopy_id="1">
               <microscope>OTHER</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>TUNGSTEN HAIRPIN</electron_source>
               <acceleration_voltage units="kV">120</acceleration_voltage>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <date>2010-01-01</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">FEI EAGLE (2k x 2k)</film_or_detector_model>
                     <average_electron_dose_per_image units="e/&#8491;^2">50</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
               <tilt_series>
                  <axis1>
                     </axis1>
               </tilt_series>
            </subtomogram_averaging_microscopy>
         </microscopy_list>
         <subtomogram_averaging_processing image_processing_id="1">
            <details>Subtomograms were manually selected. Alignments and cropping of the region of interest was done interactively with EMAN2.</details>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <resolution res_type="BY AUTHOR" units="&#8491;">100.0</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>MRC, IMOD, IVE</name>
                  </software>
               </software_list>
               <number_subtomograms_used>23</number_subtomograms_used>
            </final_reconstruction>
            <final_three_d_classification>
               <number_classes>2</number_classes>
            </final_three_d_classification>
         </subtomogram_averaging_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="1025">
      <file>emd_3287.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>64</col>
         <row>64</row>
         <sec>64</sec>
      </dimensions>
      <origin>
         <col>-32</col>
         <row>-32</row>
         <sec>-32</sec>
      </origin>
      <spacing>
         <x>64</x>
         <y>64</y>
         <z>64</z>
      </spacing>
      <cell>
         <a units="&#8491;">640.0</a>
         <b units="&#8491;">640.0</b>
         <c units="&#8491;">640.0</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-3.14941382</minimum>
         <maximum>2.12140012</maximum>
         <average>0.01397126</average>
         <std>0.27022281</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">10.0</x>
         <y units="&#8491;">10.0</y>
         <z units="&#8491;">10.0</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.52</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of trailing tips from influenza A virions.</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3287::::</details>
   </map>
   <interpretation>
      <figure_list>
         <figure>
            <file>emd_3287.png</file>
         </figure>
      </figure_list>
   </interpretation>
   <validation>
      <fsc_curve>
         <file>emd_3287_fsc.xml</file>
      </fsc_curve>
   </validation>
</emd>