<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3277" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-12-10</deposition>
         <header_release>2016-01-27</header_release>
         <map_release>2016-01-27</map_release>
         <update>2016-03-16</update>
      </key_dates>
      <title>Structures of a CRISPR-Cas9 R-loop complex primed for DNA cleavage</title>
      <authors_list>
         <author>Jiang F</author>
         <author>Taylor DW</author>
         <author>Chen JS</author>
         <author>Kornfeld JE</author>
         <author>Zhou K</author>
         <author>Thompson AJ</author>
         <author>Nogales E</author>
         <author>Doudna JA</author>
      </authors_list>
      <keywords>CRISPR-Cas, Cas9, genome editing</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Jiang F</author>
               <author order="2">Taylor DW</author>
               <author order="3">Chen JS</author>
               <author order="4">Kornfeld JE</author>
               <author order="5">Zhou K</author>
               <author order="6">Thompson AJ</author>
               <author order="7">Nogales E</author>
               <author order="8">Doudna JA</author>
               <title>Structures of a CRISPR-Cas9 R-loop complex primed for DNA cleavage.</title>
               <journal>SCIENCE</journal>
               <volume>351</volume>
               <first_page>867</first_page>
               <last_page>871</last_page>
               <year>2016</year>
               <external_references type="PUBMED">26841432</external_references>
               <external_references type="DOI">doi:10.1126/science.aad8282</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Cas9 bound to single guide-RNA and 40-bp target DNA</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Cas9 bound to single guide-RNA and 40-bp target DNA</name>
            <number_unique_components>3</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">0.218</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="Cas9">CRISPR-associated endonuclease Cas9/Csn1</name>
            <natural_source database="NCBI">
               <organism ncbi="1314">Streptococcus pyogenes</organism>
               <strain>serotype M1</strain>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.158</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_strain>BL21</recombinant_strain>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">Q99ZW2</external_references>
               <external_references type="GO">GO:0043571</external_references>
               <external_references type="GO">GO:0051607</external_references>
               <external_references type="GO">GO:0090305</external_references>
               <external_references type="GO">GO:0003677</external_references>
               <external_references type="GO">GO:0003723</external_references>
               <external_references type="GO">GO:0004519</external_references>
               <external_references type="INTERPRO">IPR028629</external_references>
               <external_references type="INTERPRO">IPR032239</external_references>
               <external_references type="INTERPRO">IPR032237</external_references>
               <external_references type="INTERPRO">IPR032240</external_references>
               <external_references type="INTERPRO">IPR025978</external_references>
               <external_references type="INTERPRO">IPR003615</external_references>
            </sequence>
         </protein_or_peptide>
         <rna macromolecule_id="2">
            <name synonym="sgRNA">single guide-RNA</name>
            <natural_source database="NCBI">
               <organism ncbi="1314">Streptococcus pyogenes</organism>
               <strain>serotype M1</strain>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.036</theoretical>
            </molecular_weight>
            <sequence>
               <string>GGCGCAUAAAGAUGAGACGCGUUUUAGAGCUAUGCUGUUUUGAAAAAAACAGCAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCUUCG</string>
            </sequence>
            <classification>OTHER</classification>
            <structure>OTHER</structure>
            <synthetic_flag>true</synthetic_flag>
         </rna>
         <dna macromolecule_id="3">
            <name synonym="dsDNA">target 40-bp double stranded DNA</name>
            <natural_source database="NCBI">
               <organism>lambda</organism>
               <strain>lambda 1</strain>
               <synonym_organism>lambda phage</synonym_organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.024</theoretical>
            </molecular_weight>
            <details>complementary strand nucleotide sequence: CGTGTTGATGCCGCGTATTTCTACTCTGCGACCGCTAATC</details>
            <sequence>
               <string>GCACAACTACGGCGCATAAAGATGAGACGCTGGCGATTAG</string>
            </sequence>
            <classification>DNA</classification>
            <structure>DOUBLE HELIX</structure>
            <synthetic_flag>true</synthetic_flag>
         </dna>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.25</concentration>
               <buffer>
                  <ph>8.0</ph>
                  <details>30mM Tris 8.0, 150mM NaCl, 20mM EDTA, 5mM DTT and 0.1% glycerol</details>
               </buffer>
               <grid>
                  <details>4/2 C-flat grids with a thin-layer of carbon over the holes</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <chamber_temperature units="K">100</chamber_temperature>
                  <instrument>FEI VITROBOT MARK IV</instrument>
                  <method>Grids were rapidly plunged into liquid ethane using an FEI Vitrobot MarkIV maintained at 4 degrees C after being blotted for 4-4.5 seconds with a blotting force of 15-20.</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2.7</nominal_cs>
               <nominal_defocus_min units="&#181;m">2.0</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">4.5</nominal_defocus_max>
               <nominal_magnification>29000.0</nominal_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>Objective astigmatism was corrected at 210,000 times magnification</astigmatism>
                  </legacy>
               </alignment_procedure>
               <details>Data acquired using Leginon. We collected a 6 s exposure fractionated into 20, 300 ms frames with a dose of 8 electrons per square Angstrom per second.</details>
               <date>2015-06-29</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                     <number_real_images>5600</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">48</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>CTFFind3</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">6.0</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>Relion</name>
                  </software>
               </software_list>
               <number_images_used>50000</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="93313">
      <file>emd_3277.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>288</col>
         <row>288</row>
         <sec>288</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>288</x>
         <y>288</y>
         <z>288</z>
      </spacing>
      <cell>
         <a units="&#8491;">290.88</a>
         <b units="&#8491;">290.88</b>
         <c units="&#8491;">290.88</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.0103324</minimum>
         <maximum>0.03063154</maximum>
         <average>0.00005857</average>
         <std>0.00134747</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.01</x>
         <y units="&#8491;">1.01</y>
         <z units="&#8491;">1.01</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.006</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of Cas9 bound to sgRNA and 40-bp target DNA</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3277::::</details>
   </map>
   <interpretation>
      <figure_list>
         <figure>
            <file>emd_3277.png</file>
         </figure>
      </figure_list>
   </interpretation>
</emd>