<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3235" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-11-09</deposition>
         <header_release>2015-11-18</header_release>
         <map_release>2016-02-10</map_release>
         <update>2016-02-17</update>
      </key_dates>
      <title>Structure of the poly-C9 component of the Complement Membrane Attack Complex</title>
      <authors_list>
         <author>Dudkina NV</author>
         <author>Spicer BA</author>
         <author>Reboul CF</author>
         <author>Conroy PJ</author>
         <author>Lukoyanova N</author>
         <author>Elmlund H</author>
         <author>Law RHP</author>
         <author>Ekkel SM</author>
         <author>Kondos SC</author>
         <author>Goode RJA</author>
         <author>Ramm G</author>
         <author>Whisstock JC</author>
         <author>Saibil HR</author>
         <author>Dunstone MA</author>
      </authors_list>
      <keywords>pore-forming protein, complement, C9, MACPF</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Dudkina NV</author>
               <author order="2">Spicer BA</author>
               <author order="3">Reboul CF</author>
               <author order="4">Conroy PJ</author>
               <author order="5">Lukoyanova N</author>
               <author order="6">Elmlund H</author>
               <author order="7">Law RH</author>
               <author order="8">Ekkel SM</author>
               <author order="9">Kondos SC</author>
               <author order="10">Goode RJ</author>
               <author order="11">Ramm G</author>
               <author order="12">Whisstock JC</author>
               <author order="13">Saibil HR</author>
               <author order="14">Dunstone MA</author>
               <title>Structure of the poly-C9 component of the complement membrane attack complex.</title>
               <journal>NAT.COMMUN.</journal>
               <volume>7</volume>
               <first_page>10588</first_page>
               <last_page>10588</last_page>
               <year>2016</year>
               <external_references type="PUBMED">26841934</external_references>
               <external_references type="DOI">doi:10.1038/ncomms10588</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>5fmw</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>C9 from human plasma</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>C9 from human plasma</name>
            <oligomeric_state>22</oligomeric_state>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">1.3</experimental>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="complement component 9">C9</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
               <tissue>Blood</tissue>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">1.3</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>22</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">P02748</external_references>
               <external_references type="GO">GO:0002376</external_references>
            </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">1</concentration>
               <buffer>
                  <ph>8.0</ph>
                  <details>10 mM Tris-HCl, 100 mM NaCl</details>
               </buffer>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <chamber_temperature units="K">91</chamber_temperature>
                  <instrument>FEI VITROBOT MARK III</instrument>
                  <method>Blot for 5s before plunging</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI POLARA 300</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2.3</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.0</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">4.0</nominal_defocus_max>
               <nominal_magnification>77000.0</nominal_magnification>
               <calibrated_magnification>36232.0</calibrated_magnification>
               <specimen_holder_model>GATAN HELIUM</specimen_holder_model>
               <temperature>
                  <temperature_min units="K">80</temperature_min>
                  <temperature_max units="K">90</temperature_max>
                  <temperature_average units="K">85</temperature_average>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>Objective lens astigmatism was corrected at 100,000 times magnification</astigmatism>
                  </legacy>
               </alignment_procedure>
               <specialist_optics>
                  <energy_filter>
                     <name>GIF Quantum</name>
                     <lower_energy_threshold units="eV">0.0</lower_energy_threshold>
                     <upper_energy_threshold units="eV">20.0</upper_energy_threshold>
                  </energy_filter>
               </specialist_optics>
               <date>2014-12-15</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                     <digitization_details>
                        <sampling_interval units="&#181;m">5</sampling_interval>
                     </digitization_details>
                     <number_real_images>1385</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">25</average_electron_dose_per_image>
                     <details>IMOD was applied to 1385 frames grouped from the 70 recorded.</details>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>The particles were selected manually.</details>
            <ctf_correction>
               <details>each micrograph</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C22</point_group>
               </applied_symmetry>
               <resolution res_type="BY AUTHOR" units="&#8491;">6.7</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>CTFFIND3, RELION, IMAGIC</name>
                  </software>
               </software_list>
               <number_images_used>5000</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
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      <file>emd_3235.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
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      <dimensions>
         <col>250</col>
         <row>250</row>
         <sec>250</sec>
      </dimensions>
      <origin>
         <col>-125</col>
         <row>-125</row>
         <sec>-125</sec>
      </origin>
      <spacing>
         <x>250</x>
         <y>250</y>
         <z>250</z>
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      <cell>
         <a units="&#8491;">690.0</a>
         <b units="&#8491;">690.0</b>
         <c units="&#8491;">690.0</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.053409</minimum>
         <maximum>0.39757299</maximum>
         <average>0.00102137</average>
         <std>0.01166051</std>
      </statistics>
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         <contour primary="true">
            <level>0.09</level>
            <source>AUTHOR</source>
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      <annotation_details>Reconstruction of the poly-C9 component of the Complement Membrane Attack Complex</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3235::::</details>
   </map>
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