<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3220" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-10-26</deposition>
         <header_release>2015-11-11</header_release>
         <map_release>2016-01-27</map_release>
         <update>2016-02-17</update>
      </key_dates>
      <title>Structure of transcribing mammalian RNA polymerase II (EC3)</title>
      <authors_list>
         <author>Bernecky C</author>
         <author>Herzog F</author>
         <author>Baumeister W</author>
         <author>Plitzko JM</author>
         <author>Cramer P</author>
      </authors_list>
      <keywords>transcription, elongation</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Bernecky C</author>
               <author order="2">Herzog F</author>
               <author order="3">Baumeister W</author>
               <author order="4">Plitzko JM</author>
               <author order="5">Cramer P</author>
               <title>Structure of transcribing mammalian RNA polymerase II.</title>
               <journal>NATURE</journal>
               <volume>529</volume>
               <first_page>551</first_page>
               <last_page>554</last_page>
               <year>2016</year>
               <external_references type="PUBMED">26789250</external_references>
               <external_references type="DOI">doi:10.1038/nature16482</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>bovine Pol II elongation complex</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>bovine Pol II elongation complex</name>
            <details>Recombinant human Gdown1 was present during sample preparation but density was not observed in this map.</details>
            <number_unique_components>3</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">0.59</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="RNA polymerase II">DNA-directed RNA polymerase II</name>
            <natural_source database="NCBI">
               <organism ncbi="9913">Bos taurus</organism>
               <synonym_organism>Cow</synonym_organism>
               <tissue>Thymus</tissue>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.52</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>Monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               <external_references type="GO">GO:0003899</external_references>
            </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name synonym="Gdown1">DNA-directed RNA polymerase II subunit GRINL1A</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.04</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>Monomer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_strain>BL21(DE3)RIL</recombinant_strain>
               <recombinant_plasmid>pOPINB</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <other_macromolecule macromolecule_id="3">
            <name synonym="DNA-RNA elongation scaffold">DNA-RNA synthetic construct</name>
            <natural_source database="NCBI">
               <organism ncbi="32644">unidentified</organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.03</theoretical>
            </molecular_weight>
            <classification>DNA/RNA</classification>
            <structure>OTHER</structure>
            <synthetic_flag>true</synthetic_flag>
         </other_macromolecule>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.3</concentration>
               <buffer>
                  <ph>7.25</ph>
                  <details>150 mM NaCl, 5 mM HEPES, 0.01 mM ZnCl2, 10 mM DTT</details>
               </buffer>
               <grid>
                  <details>Quantifoil R 3.5/1 holey carbon grids</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <instrument>FEI VITROBOT MARK IV</instrument>
                  <method>Four microliters of sample was applied to glow-discharged Quantifoil R 3.5/1 holey carbon grids, which were then blotted for 8.5s and plunge-frozen in liquid ethane.</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.6</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.1</nominal_defocus_max>
               <nominal_magnification>37000.0</nominal_magnification>
               <calibrated_magnification>37037.0</calibrated_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <specialist_optics>
                  <energy_filter>
                     <name>GIF Quantum</name>
                     <lower_energy_threshold units="eV">0.0</lower_energy_threshold>
                     <upper_energy_threshold units="eV">20.0</upper_energy_threshold>
                  </energy_filter>
               </specialist_optics>
               <date>2014-12-01</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                     <number_real_images>1172</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">43</average_electron_dose_per_image>
                     <details>Each movie image was collected over 8 s fractionated into 40 frames (0.2 s each).</details>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>Each particle</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">3.7</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>RELION</name>
                  </software>
               </software_list>
               <number_images_used>184122</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="33164">
      <file>emd_3220.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>204</col>
         <row>204</row>
         <sec>204</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>204</x>
         <y>204</y>
         <z>204</z>
      </spacing>
      <cell>
         <a units="&#8491;">275.4</a>
         <b units="&#8491;">275.4</b>
         <c units="&#8491;">275.4</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.03549683</minimum>
         <maximum>0.10071836</maximum>
         <average>-0.00005501</average>
         <std>0.0055686</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.35</x>
         <y units="&#8491;">1.35</y>
         <z units="&#8491;">1.35</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.024</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Bovine Pol II elongation complex EC3, unsharpened map</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3220::::</details>
   </map>
   <interpretation>
      <figure_list>
         <figure>
            <file>emd_3220.tif</file>
         </figure>
      </figure_list>
   </interpretation>
</emd>