REL PDBe PDBe PDBe 2015-10-26 2015-11-18 2015-12-16 2015-12-30 In situ sub-tomogram average of the host-contact Chlamydia trachomatis type III secretion system Nans A Kudryashev M Saibil HR Hayward RD injectisome, type III secretion, T3SS Nans A Kudryashev M Saibil HR Hayward RD Structure of a bacterial type III secretion system in contact with a host membrane in situ NAT.COMMUN. 6 10114 10114 2015 26656452 doi:10.1038/ncomms10114 EMD-3216 FULLOVERLAP Chlamydia trachomatis type III secretion system (host-contact) Chlamydia trachomatis type III secretion system (host-contact) 1 Chlamydia trachomatis type III secretion system
Type III secretion systems were imaged in contact with U2OS or HeLa cells grown directly on EM grids.
false Chlamydia trachomatis subtomogramAveraging cell
200 mesh gold Quantifoil 3.5/1
 ETHANE 100 FEI VITROBOT MARK IV Blot for 6-10 seconds before plunging. FEI POLARA 300 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.3 -10.0 41000.0 SIDE ENTRY, EUCENTRIC Gatan Quantum 0.0 20.0 2014-11-10 GATAN K2 SUMMIT (4k x 4k) 55 -45 60
Sub-tomograms were selected in IMOD and cropped in Dynamo. Alignment and averaging was carried out in Dynamo.
C12 38.0 OTHER IMOD, Dynamo 196
Each micrograph was phase-flipped in IMOD using the measured defocus
 emd_3217.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 1382.4 1382.4 1382.4 90.0 90.0 90.0 X Y Z 0.0 7.1382885 3.39157796 0.19868028 5.4 5.4 5.4 3.84 AUTHOR Sub-tomogram average of Chlamydia trachomatis type III secretion system (host-contact)
::::EMDATABANK.org::::EMD-3217::::