<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3213" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-10-23</deposition>
         <header_release>2015-11-11</header_release>
         <map_release>2015-12-30</map_release>
         <update>2016-01-13</update>
      </key_dates>
      <title>Architecture of human mTOR Complex 1 - 5.9 Angstrom reconstruction</title>
      <authors_list>
         <author>Aylett CHS</author>
         <author>Sauer E</author>
         <author>Imseng S</author>
         <author>Boehringer D</author>
         <author>Hall MN</author>
         <author>Ban N</author>
         <author>Maier T</author>
      </authors_list>
      <keywords>Rapamycin, TOR, mTOR, Raptor, mLST8, FKBP, mTORC1</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Aylett CHS</author>
               <author order="2">Sauer E</author>
               <author order="3">Imseng S</author>
               <author order="4">Boehringer D</author>
               <author order="5">Hall MN</author>
               <author order="6">Ban N</author>
               <author order="7">Maier T</author>
               <title>Architecture of human mTOR Complex 1</title>
               <journal>SCIENCE</journal>
               <volume>351</volume>
               <first_page>48</first_page>
               <last_page>52</last_page>
               <year>2016</year>
               <external_references type="PUBMED">26678875</external_references>
               <external_references type="DOI">doi:10.1126/SCIENCE.AAA3870</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>5flc</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>Human mTOR complex 1</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Human mTOR complex 1</name>
            <oligomeric_state>tetrameric</oligomeric_state>
            <number_unique_components>3</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">1</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name>mTOR</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.29</theoretical>
            </molecular_weight>
            <oligomeric_state>Dimeric</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="7108">Spodoptera frugiperda</recombinant_organism>
               <recombinant_cell>21</recombinant_cell>
               <recombinant_plasmid>Multibac</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">P42345</external_references>
            </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name>Raptor</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.15</theoretical>
            </molecular_weight>
            <oligomeric_state>Dimeric</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="7108">Spodoptera frugiperda</recombinant_organism>
               <recombinant_cell>21</recombinant_cell>
               <recombinant_plasmid>Multibac</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">Q8N122</external_references>
            </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="3">
            <name>mLST8</name>
            <natural_source database="NCBI">
               <organism ncbi="9606">Homo sapiens</organism>
               <synonym_organism>Human</synonym_organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.04</theoretical>
            </molecular_weight>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="7108">Spodoptera frugiperda</recombinant_organism>
               <recombinant_cell>21</recombinant_cell>
               <recombinant_plasmid>Multibac</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">Q9BVC4</external_references>
            </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>8.0</ph>
                  <details>100 mM NaCl, 10 mM NaBicine, 1 mM TCEP</details>
               </buffer>
               <grid>
                  <details>Quantifoil R2/2 with an additional thin carbon layer</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <chamber_temperature units="K">120</chamber_temperature>
                  <instrument>FEI VITROBOT MARK I</instrument>
                  <method>4 second blotting</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2.7</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.9</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">4.0</nominal_defocus_max>
               <nominal_magnification>59000.0</nominal_magnification>
               <calibrated_magnification>100719.0</calibrated_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <temperature>
                  <temperature_average units="K">100</temperature_average>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>Objective lens astigmatism was corrected at 150,000 times magnification</astigmatism>
                  </legacy>
               </alignment_procedure>
               <date>2015-05-05</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">FEI FALCON II (4k x 4k)</film_or_detector_model>
                     <number_real_images>6299</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">25</average_electron_dose_per_image>
                     <details>Single movie frame readout. 7 frames per exposure. Drift corrected in post-processing. 4 images per hole.</details>
                     <bits_per_pixel>16.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Poor quality micrographs were rejected by eye, based on the extent and regularity of the Thon rings observed in the contrast transfer function. Estimation of the contrast transfer function was carried out for each image using CTFFIND3, particles were selected semi-automatically using boxer and batchboxer.</details>
            <ctf_correction>
               <details>Each image</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C2</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">5.9</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>CTFFIND3, RELION, 1.3</name>
                  </software>
               </software_list>
               <details>For full details see the supplemental materials and methods in the accompanying publication which provides processing details and the classification schema.</details>
               <number_images_used>309792</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="65537">
      <file>emd_3213.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>256</col>
         <row>256</row>
         <sec>256</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>256</x>
         <y>256</y>
         <z>256</z>
      </spacing>
      <cell>
         <a units="&#8491;">355.84</a>
         <b units="&#8491;">355.84</b>
         <c units="&#8491;">355.84</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.04557803</minimum>
         <maximum>0.20396529</maximum>
         <average>0.00100273</average>
         <std>0.01044368</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.39</x>
         <y units="&#8491;">1.39</y>
         <z units="&#8491;">1.39</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.066</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Human mTOR complex 1</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3213::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <initial_model>
               <access_code>4JSN</access_code>
               <chain>
                  <chain_id>B</chain_id>
               </chain>
               <chain>
                  <chain_id>D</chain_id>
               </chain>
            </initial_model>
            <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            <software_list>
               <software>
                  <name>Chimera</name>
               </software>
            </software_list>
            <target_criteria>CC</target_criteria>
            <refinement_space>REAL</refinement_space>
         </modelling>
      </modelling_list>
   </interpretation>
</emd>