REL PDBe PDBe PDBe 2015-10-03 2015-10-28 2015-11-04 2015-11-25 Structure of the in vitro assembled bacteriophage phi6 polymerase complex Ilca S Kotecha A Sun X Poranen MP Stuart DI Huiskonen JT Bacteriophage phi6, polymerase complex Ilca SL Kotecha A Sun X Poranen MP Stuart DI Huiskonen JT Localized reconstruction of subunits from electron cryomicroscopy images of macromolecular complexes Nat. Commun. 6 8843 2015 26534841 doi:10.1038/ncomms9843 5fj5 FULLOVERLAP Bacteriophage phi6 polymerase complex assembled in vitro from purified proteins P1, P2, and P4 Bacteriophage phi6 polymerase complex assembled in vitro from purified proteins P1, P2, and P4 Icosahedral assembly with 120 copies of P1 3 P1 protein from bacteriophage phi6 Pseudomonas phage phi6 0.085 120 60 asymmetric dimers from an icosahedral shell true Pseudomonas syringae pathovar phaseolicola pLM358 P11126 P2 protein from bacteriophage phi6 Pseudomonas phage phi6 bacteriophage phi6 0.075 monomer true Pseudomonas syringae pathovar phaseolicola pLM358 P11124 P4 protein from bacteriophage phi6 Pseudomonas phage phi6 bacteriophage phi6 0.035 hexamer true Pseudomonas syringae pathovar phaseolicola pLM358 P11125 singleParticle particle 2.4 8.0
50 mM Tris
glow discharged Cflat grid (CF-2/1-2C-T)
 ETHANE 120 FEI VITROBOT MARK IV Blot 4 seconds before plunging FEI POLARA 300 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.0 1.1 2.6 160000.0 37037.0 OTHER 81 120 81 GIF QUANTUM LS 0.0 20.0
dose rate 6-8 e-/pix/s
2014-06-12 GATAN K2 SUMMIT (4k x 4k) 5 834 16
Every image is the average of 22 frames recorded by the direct electron detector
16.
Particles were selected from the best classes after 2D and 3D classification
Each particle
 I OTHER 4.8 OTHER Relion
Final map was postprocessed in Relion. Inverse B-factor of 200 was applied.
4379 emd_3185.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 648.0 648.0 648.0 90.0 90.0 90.0 X Y Z -0.04862845 0.05562008 -0.0000143 0.00450121 1.35 1.35 1.35 0.02 AUTHOR Icosahedral reconstruction of in vitro assembled bacteriophage phi6 polymerase complex
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 4K7H A B RIGID BODY FIT Chimera, COOT, Phenix REAL
emd_3185.tiff
emd_3185_msk_1.map emd_3185_msk_1.map 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 648.0 648.0 648.0 90.0 90.0 90.0 X Y Z 0.0 1.0 0.07750795 0.25389931 1.35 1.35 1.35 Mask used for FSC
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 emd_3185_fsc.xml