<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3180" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-10-02</deposition>
         <header_release>2015-11-04</header_release>
         <map_release>2015-11-25</map_release>
         <update>2016-01-13</update>
      </key_dates>
      <title>Cryo-EM structure of yeast apo RNA polymerase III at 4.7 A</title>
      <authors_list>
         <author>Hoffmann NA</author>
         <author>Jakobi AJ</author>
         <author>Moreno-Morcillo M</author>
         <author>Glatt S</author>
         <author>Kosinski J</author>
         <author>Hagen WJ</author>
         <author>Sachse C</author>
         <author>Muller CW</author>
      </authors_list>
      <keywords>RNA polymerase III, pol III, transcription, RNA polymerase,</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Hoffmann NA</author>
               <author order="2">Jakobi AJ</author>
               <author order="3">Moreno-Morcillo M</author>
               <author order="4">Glatt S</author>
               <author order="5">Kosinski J</author>
               <author order="6">Hagen WJ</author>
               <author order="7">Sachse C</author>
               <author order="8">Muller CW</author>
               <title>Molecular structures of unbound and transcribing RNA polymerase III</title>
               <journal>NATURE</journal>
               <volume>528</volume>
               <first_page>231</first_page>
               <last_page>236</last_page>
               <year>2015</year>
               <external_references type="PUBMED">26605533</external_references>
               <external_references type="DOI">doi:10.1038/NATURE16143</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>5fja</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>S.cerevisiae apo RNA polymerase III (open clamp conformation)</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>S.cerevisiae apo RNA polymerase III (open clamp conformation)</name>
            <oligomeric_state>Monomer</oligomeric_state>
            <number_unique_components>17</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">0.69</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name>RNA polymerase III</name>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
               <synonym_organism>Yeast</synonym_organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.69</experimental>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>Monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.2</concentration>
               <buffer>
                  <ph>7.5</ph>
                  <details>150mM (NH4)2SO4, 15mM Tris, 10mM DTT</details>
               </buffer>
               <grid>
                  <details>Mo 400 mesh Quantifoil 1.2/1.3</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">95</chamber_humidity>
                  <instrument>FEI VITROBOT MARK III</instrument>
                  <method>2.5 ul of sample was applied
15 seconds wait time
Blot for 9 seconds before plunging</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2.7</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.4</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">4.2</nominal_defocus_max>
               <nominal_magnification>75000.0</nominal_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <date>2014-12-15</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">FEI FALCON II (4k x 4k)</film_or_detector_model>
                     <number_real_images>2398</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">42</average_electron_dose_per_image>
                     <details>Seven frames were recorded with a dose of 6 e/A2 per frame.</details>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>Each particle</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <resolution res_type="BY AUTHOR" units="&#8491;">4.7</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>Relion</name>
                  </software>
               </software_list>
               <number_images_used>52423</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="101307">
      <file>emd_3180.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>296</col>
         <row>296</row>
         <sec>296</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>296</x>
         <y>296</y>
         <z>296</z>
      </spacing>
      <cell>
         <a units="&#8491;">320.86398</a>
         <b units="&#8491;">320.86398</b>
         <c units="&#8491;">320.86398</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.11491907</minimum>
         <maximum>0.29711699</maximum>
         <average>0.00125677</average>
         <std>0.00930413</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.084</x>
         <y units="&#8491;">1.084</y>
         <z units="&#8491;">1.084</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.055</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of apo RNA polymerase III in the open clamp conformation</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3180::::</details>
   </map>
   <interpretation>
      <figure_list>
         <figure>
            <file>emd_3180.jpg</file>
         </figure>
      </figure_list>
   </interpretation>
   <validation>
      <fsc_curve>
         <file>emd_3180_fsc.xml</file>
      </fsc_curve>
   </validation>
</emd>