2025-03-19 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin pdbx_database_related _em_admin.last_update _pdbx_database_related.details STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond em_3d_fitting_list em_admin pdbx_entry_details pdbx_initial_refinement_model pdbx_modification_feature _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_admin.last_update _pdbx_entry_details.has_protein_modification DATABASE_REFERENCES em_admin pdbx_database_related _em_admin.last_update _pdbx_database_related.details PDBj PDBj 2021-08-20 2021-09-22 2021-09-22 2025-03-19 2021-09-22 EMD-30928 National Natural Science Foundation of China (NSFC) 31570748 China National Natural Science Foundation of China (NSFC) U1632127 China Chinese Academy of Sciences XDB37020204 China Chinese Academy of Sciences QYZDB-SSW-SMC037 China Cryo-EM structure of Patched in lipid nanodisc - the wildtype, 3.5 angstrom (re-processed with dataset of 7dzq) Luo Y Zhao Y Caveolae, Hedgehog signaling, Lipid nanodisc, Patched, Ptc1 dimer, membrane protein Luo Y Wan G Zhang X Zhou X Wang Q Fan J Cai H Ma L Wu H Qu Q Cong Y Zhao Y Li D Cryo-EM study of patched in lipid nanodisc suggests a structural basis for its clustering in caveolae. Structure UK 29 1286 2021 34174188 doi:10.1016/j.str.2021.06.004 0969-2126 2005 STRUE6 7v6y FULLOVERLAP Ptc1 in lipid nanodisc Ptc1 in lipid nanodisc 0 1 Mus musculus 160 Protein patched homolog 1,Protein patched homolog 1 Mus musculus 0.12163761699999999 1 Homo sapiens LEVO MGSASAGNAAGALGRQAGGGRRRRTGGPHRAAPDRDYLHRPSYCDAAFALEQISKGKATGRKAPLWLRAKFQRLLFKLGC YIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPKEEGANVLTT EALLQHLDSALQASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKP PLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNSTKPLDVALVLNGGCQGLSR KYMHWQEELIVGGTVKNATGKLVSAHALQTMFQLMTPKQMYEHFRGYDYVSHINWNEDRAAAILEAWQRTYVEVVHQSVA PNSTQKVLPFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIG ISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRA FSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCFTSPCVSRVIQVEPQEPPCTKWTLSSFAEKHYAPFLLKP KAKVVVILLFLGLLGVSLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHKSFS NVKYVMLEENKQLPQMWLHYFRDWLQGLQDAFDSDWETGRIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQLTKQRL VDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFYLNGLRDTSDF VEAIEKVRVICNNYTSLGLSSYPNGYPFLFWEQYISLRHWLLLSISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVEL FGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNHRAMLALEHMFAPVLDGAVSTLLGVLMLAGSEFDF IVRYFFAVLAILTVLGVLNGLVLLPVLLSFFGPCPEVSPANGTLEVLFQG Q61115 Q61115 CHOLESTEROL 0.000386654 2 CLR (2S)-2-azanyl-3-[[(2S)-3-butanoyloxy-2-dec-9-enoyloxy-propoxy]-oxidanyl-phosphoryl]oxy-propanoic acid 0.00048147399999999996 1 5VI 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 3 NAG singleParticle particle 8.5 7.5 150.0 NaCl sodium chloride 20.0 HEPES (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid) 0.5 CaCl2 calsium chloride 0.1 EDTA Ethylenediaminetetraacetic acid 0.2 TCEP tris(2-carboxyethyl)phosphine ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 1.5 1.1 2.2 3.0 120000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) 5760 4092 1 2.23 60.0 1 1363356 BACK PROJECTION 3.5 FSC 0.143 CUT-OFF cryoSPARC 3.2 172299 RANDOM ASSIGNMENT cryoSPARC 3.2 PROJECTION MATCHING 1 cryoSPARC 3.2 2 174964.0 cryoSPARC 3.2 emd_31753.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 264 264 264 0 0 0 264 264 264 216.48 216.48 216.48 90.0 90.0 90.0 X Y Z -2.5728045 4.252389 0.001684434 0.074830465 0.82 0.82 0.82 0.355 AUTHOR 6MG8 PDB experimental model FLEXIBLE FIT REAL 57.039999999999999