2022-02-23 REL PDBj PDBj PDBj 2021-06-16 2021-08-11 2021-08-11 2022-02-23 Japan Agency for Medical Research and Development (AMED) JP21am0101071 Japan Japan Society for the Promotion of Science (JSPS) 21K06032 Japan Japan Society for the Promotion of Science (JSPS) JP18J00191 Japan Cryo-EM structure of the minimal protein-only RNase P from Aquifex aeolicus reveals structural insight into precursor tRNA recognition and catalysis Teramoto T Koyasu T Adachi N Kawasaki M Moriya T Numata T Senda T Kakuta Y Teramoto T Koyasu T Adachi N Kawasaki M Moriya T Numata T Senda T Kakuta Y Minimal protein-only RNase P structure reveals insights into tRNA precursor recognition and catalysis. J.Biol.Chem. US 297 101028 101028 2021 34339732 doi:10.1016/j.jbc.2021.101028 1083-351X 0071 JBCHA3 EMD-31432 associated EM volume 7f3e FULLOVERLAP Aq880 dodecamer Aq880 dodecamer 0 1
homo dodecamer
Aquifex aeolicus Escherichia coli BL21-CodonPlus (DE3)-RIL pE_SUMO 0.270 Aq880 Aquifex aeolicus
GGATS is derived from plasmid
Escherichia coli LEVO GGATSMDVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTEMRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRIAEEHTREASGCEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVRHRF singleParticle particle 5.0 8.0 50.0 Tris-HCl 100.0 NaCl 0.5 TCEP Quantifoil R1.2/1.3 COPPER 300 CARBON HOLEY GLOW DISCHARGE AIR
The grid was washed by acetone prior to use.
 ETHANE 100 291 FEI VITROBOT MARK IV
Blotting time was 5 seconds (blot force 20).
This sample was mono-disperse.
 TFS TALOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 50.0 2.7 1.0 2.5 120000.0 NITROGEN FEI FALCON III (4k x 4k) COUNTING 1 2370 48.62 50.0 1 1486899 Gctf
An ab initio model was generated using RELION3's own implementation of Stochastic Gradient Descent (SGD) algorithm and low-pass filtered to 60 A for use as an initial model for 3D classification.
 1 C2 FOURIER SPACE 3.62 FSC 0.143 CUT-OFF RELION 3.1 238017 MAXIMUM LIKELIHOOD RELION 3.1 MAXIMUM LIKELIHOOD RELION 3.1 2 269058.0 RELION 3.1 emd_31432.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 264.0 264.0 264.0 90.0 90.0 90.0 X Y Z -0.22482038 0.3349125 -0.0004991695 0.0086592715 0.88 0.88 0.88 0.06 AUTHOR emd_31432_msk_1.map emd_31432_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 264.0 264.0 264.0 90.0 90.0 90.0 X Y Z -0.025918433 0.07444347 -0.0004992947 0.0032489214 0.88 0.88 0.88 AUTHOR emd_31432_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 264.0 264.0 264.0 90.0 90.0 90.0 X Y Z -0.033557326 0.07954094 -0.00051072775 0.0035562606 0.88 0.88 0.88 AUTHOR emd_31432_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 264.0 264.0 264.0 90.0 90.0 90.0 X Y Z -0.03710304 0.08159589 -0.00048761122 0.0035535574 0.88 0.88 0.88 AUTHOR