<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3142" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-09-04</deposition>
         <header_release>2015-10-28</header_release>
         <map_release>2015-10-28</map_release>
         <update>2015-10-28</update>
      </key_dates>
      <title>Electron cryo-microscopy of PrgJ/NAIP2/CARD-truncated NLRC4 inflammasome with pseudo c10 symmetry</title>
      <authors_list>
         <author>Hu ZH</author>
         <author>Zhou Q</author>
         <author>Zhang CL</author>
         <author>Fan SL</author>
         <author>Cheng W</author>
         <author>Zhao Y</author>
         <author>Shao F</author>
         <author>Wang HW</author>
         <author>Sui SF</author>
         <author>Chai JJ</author>
      </authors_list>
      <keywords>inflammasome, NLRC4, NAIP</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Hu ZH</author>
               <author order="2">Zhou Q</author>
               <author order="3">Zhang CL</author>
               <author order="4">Fan SL</author>
               <author order="5">Cheng W</author>
               <author order="6">Zhao Y</author>
               <author order="7">Shao F</author>
               <author order="8">Wang HW</author>
               <author order="9">Sui SF</author>
               <author order="10">Chai JJ</author>
               <title>Structural and Biochemical Basis for Induced Self-propagation of NLRC4</title>
               <journal>SCIENCE</journal>
               <volume>350</volume>
               <first_page>399</first_page>
               <last_page>404</last_page>
               <year>2015</year>
               <external_references type="PUBMED">26449475</external_references>
               <external_references type="DOI">doi:10.1126/science.aac5489</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>PrgJ/NAIP2/CARD-truncated NLRC4 inflammasome</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>PrgJ/NAIP2/CARD-truncated NLRC4 inflammasome</name>
            <oligomeric_state>10 copies of heterotrimer of PrgJ, NAIP2 and CARD-truncated NLRC4</oligomeric_state>
            <number_unique_components>3</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">1.0</experimental>
               <theoretical units="MDa">1.0</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="IPAF">NLRC4</name>
            <natural_source database="NCBI">
               <organism ncbi="10090">Mus musculus</organism>
               <synonym_organism>mouse</synonym_organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.1</experimental>
               <theoretical units="MDa">0.1</theoretical>
            </molecular_weight>
            <number_of_copies>10</number_of_copies>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="7108">Spodoptera frugiperda</recombinant_organism>
               <recombinant_cell>sf21</recombinant_cell>
               <recombinant_plasmid>pFastBac 1</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name>PrgJ</name>
            <natural_source database="NCBI">
               <organism ncbi="90371">Salmonella enterica subsp. enterica serovar Typhimurium</organism>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="7108">Spodoptera frugiperda</recombinant_organism>
               <recombinant_cell>sf21</recombinant_cell>
               <recombinant_plasmid>pFastBac 1</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="3">
            <name>NAIP2</name>
            <natural_source database="NCBI">
               <organism ncbi="10090">Mus musculus</organism>
               <synonym_organism>mouse</synonym_organism>
            </natural_source>
            <number_of_copies>1</number_of_copies>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="7108">Spodoptera frugiperda</recombinant_organism>
               <recombinant_cell>sf21</recombinant_cell>
               <recombinant_plasmid>pFastBac 1</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.5</concentration>
               <buffer>
                  <ph>8.0</ph>
                  <details>10 mM Tris-HCl pH 8.0, 100 mM NaCl and 10 mM DTT</details>
               </buffer>
               <grid>
                  <details>200 mesh copper grid</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <chamber_temperature units="K">110</chamber_temperature>
                  <instrument>FEI VITROBOT MARK IV</instrument>
                  <method>Blot for 1 second</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2.7</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.0</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.0</nominal_defocus_max>
               <nominal_magnification>22500.0</nominal_magnification>
               <calibrated_magnification>37879.0</calibrated_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>Objective lens astigmatism was corrected at 22,500 times magnification</astigmatism>
                  </legacy>
               </alignment_procedure>
               <date>2014-05-26</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GATAN K2 (4k x 4k)</film_or_detector_model>
                     <number_real_images>2039</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">46</average_electron_dose_per_image>
                     <details>Every image is the average of 32 frames recorded by the direct electron detector</details>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>Each micrograph</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C10</point_group>
               </applied_symmetry>
               <resolution res_type="BY AUTHOR" units="&#8491;">6.7</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>EMAN2, RELION1.3</name>
                  </software>
               </software_list>
               <number_images_used>3233</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
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      <file>emd_3142.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>320</col>
         <row>320</row>
         <sec>320</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
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      <spacing>
         <x>320</x>
         <y>320</y>
         <z>320</z>
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      <cell>
         <a units="&#8491;">422.40002</a>
         <b units="&#8491;">422.40002</b>
         <c units="&#8491;">422.40002</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.01337608</minimum>
         <maximum>0.03338128</maximum>
         <average>-0.00000303</average>
         <std>0.00198181</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.32</x>
         <y units="&#8491;">1.32</y>
         <z units="&#8491;">1.32</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.01</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of PrgJ/NAIP2/CARD-truncated NLRC4 inflammasome with pseudo c10 symmetry</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3142::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <initial_model>
               <access_code>4KXF</access_code>
            </initial_model>
            <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            <software_list>
               <software>
                  <name>Chimera</name>
               </software>
            </software_list>
            <refinement_space>REAL</refinement_space>
         </modelling>
      </modelling_list>
      <figure_list>
         <figure>
            <file>emd_3142.png</file>
         </figure>
      </figure_list>
   </interpretation>
   <validation>
      <fsc_curve>
         <file>emd_3142_fsc.xml</file>
      </fsc_curve>
   </validation>
</emd>