REL PDBe PDBe PDBe 2015-09-03 2016-01-13 2016-08-10 2016-08-24 Multiple capsid-stabilizing protein-RNA and protein-protein interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis Shakeel S Westerhuis BM Domanska A Koning RI Matadeen R Koster AJ Bakker AQ Beaumont T Wolthers KC Butcher SJ picornavirus, parechovirus, human parechovirus 3, HPeV3, HPEV3, neonatal sepsis, cryoEM, image processing, single particle anaylsis, Fab AT12-015, HPeV3-Fab AT12-015 Shakeel S Westerhuis BM Domanska A Koning RI Matadeen R Koster AJ Beaumont T Wolthers KC Butcher SJ Structure of an emerging, neonatal sepsis causing picornavirus at near-atomic resolution using electron cryo-microscopy NAT.COMMUN. 7 11387 2016 27435188 doi:10.1038/ncomms11387 Fab fragment of Mab AT12-015 to Human Parechovirus 3 Fab fragment of Mab AT12-015 to Human Parechovirus 3
The sample was monodisperse
icosahedrally-symmetric virus with 60 copies each of VP0, VP3 and VP1 in complex with 60 copies of Fab AT12-015 2 Human parechovirus 3 Human parechovirus 3 Homo sapiens VERTEBRATES Chlorocebus aethiops Vero 280 1 VIRION OTHER false false HPeV3 human monoclonal antibody AT12-015 Homo sapiens Human
Fab fragments of human monoclonal antibody AT12-015.
60 true Homo sapiens HEK293 singleParticle particle 1 7.5
10 mM Tris-HCL, 150 mM NaCl, 1 mM MgCl2
 NEGATIVE
Unstained
Holey carbon copper grids with ultrathin carbon support from TED PELLA.
 ETHANE HOMEMADE PLUNGER FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 1.46 3.56 50000.0 GATAN LIQUID NITROGEN 2015-08-17 KODAK SO-163 FILM ZEISS SCAI 7 31 18 Liquid nitrogen cooled
Particles were selected using boxer in Eman2. Random model generated using Auto3dem. Reconstruction done using Auto3dem.
Each micrograph
 I OTHER 15.0 OTHER CTFFIND3, EMAN2, and, AUTO3DEM 564 emd_3138.map.gz 1 IMAGE STORED AS SIGNED INTEGER (2 BYTES) 101 101 101 -50 -50 -50 101 101 101 565.6 565.6 565.6 90.0 90.0 90.0 X Y Z -32768.0 32767.0 355.384674070000017 4700.456542969999646 5.6 5.6 5.6 5000.0 AUTHOR Reconstruction of human parechovirus 3 in complex with Fab AT12-015.
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emd_3138.tif
emd_3138_fsc.xml