REL PDBe PDBe PDBe 2015-08-23 2015-09-16 2015-10-14 2015-12-02 Cryo-EM structures of the 50S ribosome subunit bound with HflX Zhang Y Mandava CS Cao W Li X Zhang D Li N Zhang Y Zhang X Qin Y Mi K Lei J Sanyal S Gao N Ribosome rescue Zhang Y Mandava CS Cao W Li X Zhang D Li N Zhang Y Zhang X Qin Y Mi K Lei J Sanyal S Gao N HflX is a ribosome splitting factor rescuing stalled ribosomes under stress conditions NAT.STRUCT.MOL.BIOL. 22 906 913 2015 26458047 doi:10.1038/nsmb.3103 5ady FULLOVERLAP 50S-HflX complex 50S-HflX complex 2 1.5 1.5 prokaryotic 50S ribosome subunit false Escherichia coli K-12 Cytoplasm 1.5 1.5 ribosome-prokaryote: LSU 50S HflX Escherichia coli Cytoplasm 0.05 0.05
GMPPNP was bound with HflX in the 50S-HflX complex.
1 monomer true Escherichia coli BL21 pET28a P25519 singleParticle particle 7.5
20mM Tris-HCl, 100mM NH4Cl, 10mM MgCl2
200 mesh copper grid with thin carbon support, glow discharged
 ETHANE 100 FEI VITROBOT MARK IV Blot for 1 seconds before plunging FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.70 1.0 4.0 75000.0 FEI TITAN KRIOS AUTOGRID HOLDER 2012-01-07 FEI EAGLE (4k x 4k) 6022 20
Each particle
 C1 OTHER 4.5 OTHER Spider, Relion 384206 emd_3133.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 -149 -149 -149 300 300 300 349.77 349.77 349.77 90.0 90.0 90.0 X Y Z -2.33597445 5.85036802 0.04000991 0.41606173 1.1659 1.1659 1.1659 1.4 AUTHOR Cryo-EM structures of the 50S ribosome subunit bound with HflX
::::EMDATABANK.org::::EMD-3133::::
 3FIK FLEXIBLE FIT MDFF REAL 3KXI FLEXIBLE FIT MDFF
Atomic model of E. coli HflX was modeled from the crystal structure of Sulfolobus solfataricus HflX (PDB id: 3KXI).The homology modeling was performed with MODELLER. The model of the CTD of E. coli HflX was independently modeled by I-TASSER (template PDB code: 2WBM, residues 164-232). The switch I region disordered in the crystal structure of S. solfataricus HflX was modeled using the crystal structure of S. thermophilus NFeoB (PDB id: 3B1X) as a template. GMPPNP was derived from a previous model (PDB id: 3B1X) and docked into the atomic model of the E. coli HflX.
REAL
emd_3133.png