<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3113" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-08-06</deposition>
         <header_release>2015-08-26</header_release>
         <map_release>2015-10-21</map_release>
         <update>2015-11-25</update>
      </key_dates>
      <title>Negative stain EM structure of the Tse6-Tsi6-VgrG1-EagT6-EF-Tu complex</title>
      <authors_list>
         <author>Whitney J</author>
         <author>Quentin D</author>
         <author>Sawai S</author>
         <author>LeRoux M</author>
         <author>Harding B</author>
         <author>Ledvina H</author>
         <author>Tran B</author>
         <author>Robinson H</author>
         <author>Goo YA</author>
         <author>Goodlett D</author>
         <author>Raunser S</author>
         <author>Mougous J</author>
      </authors_list>
      <keywords>Type VI secretion system, bacterial competition, polymicrobial, effector, glycohydrolase</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Whitney J</author>
               <author order="2">Quentin D</author>
               <author order="3">Sawai S</author>
               <author order="4">LeRoux M</author>
               <author order="5">Harding B</author>
               <author order="6">Ledvina H</author>
               <author order="7">Tran B</author>
               <author order="8">Robinson H</author>
               <author order="9">Goo YA</author>
               <author order="10">Goodlett D</author>
               <author order="11">Raunser S</author>
               <author order="12">Mougous J</author>
               <title>An Interbacterial NAD(P) Glycohydrolase Toxin Requires Elongation Factor Tu for Delivery to Target Cells.</title>
               <journal>CELL(CAMBRIDGE,MASS.)</journal>
               <volume>163</volume>
               <first_page>607</first_page>
               <last_page>619</last_page>
               <year>2015</year>
               <external_references type="PUBMED">26456113</external_references>
               <external_references type="DOI">doi:10.1016/j.cell.2015.09.027</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Tse6-Tsi6-VgrG1-EagT6-EF-Tu complex</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Tse6-Tsi6-VgrG1-EagT6-EF-Tu complex</name>
            <oligomeric_state>Trimer of VgrG1 binds to monomers of Tse6, Tsi6, EF-Tu and a dimer of EagT6</oligomeric_state>
            <number_unique_components>5</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">0.364</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="VgrG1">Valine-glycine repeat protein 1</name>
            <natural_source database="NCBI">
               <organism ncbi="208964">Pseudomonas aeruginosa PAO1</organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.072</theoretical>
            </molecular_weight>
            <number_of_copies>3</number_of_copies>
            <oligomeric_state>Trimer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">Q9I741</external_references>
            </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name synonym="Tse6">Type VI secretion exported 6</name>
            <natural_source database="NCBI">
               <organism ncbi="208964">Pseudomonas aeruginosa PAO1</organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.045</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>Monomer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">Q9I739</external_references>
            </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="3">
            <name synonym="Tsi6">Type VI secretion immunity 6</name>
            <natural_source database="NCBI">
               <organism ncbi="208964">Pseudomonas aeruginosa PAO1</organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.011</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>Monomer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">Q9I740</external_references>
            </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="4">
            <name synonym="EagT6">Effector associated gene with tse6</name>
            <natural_source database="NCBI">
               <organism ncbi="208964">Pseudomonas aeruginosa PAO1</organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.016</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>Dimer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">Q9I738</external_references>
            </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="5">
            <name synonym="EF-Tu">Elongation factor Tu 1</name>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
               <synonym_organism>Escherichia coli</synonym_organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.043</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>Monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">P0CE47</external_references>
            </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.02</concentration>
               <buffer>
                  <ph>8.0</ph>
                  <details>150 mM NaCl, 20 mM Tris-HCl</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>Grids with adsorbed Protein floated on 0.75% Uranyl Formate for 45 sec</details>
               </staining>
               <grid>
                  <details>glow discharged 400 mesh copper grids with thin carbon support</details>
               </grid>
               <vitrification>
                  <cryogen_name>NONE</cryogen_name>
                  <instrument>OTHER</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>JEOL 1400</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>LAB6</electron_source>
               <acceleration_voltage units="kV">120</acceleration_voltage>
               <nominal_cs units="mm">3.4</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.0012</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">0.002</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <calibrated_magnification>67210.0</calibrated_magnification>
               <specimen_holder_model>SIDE ENTRY, EUCENTRIC</specimen_holder_model>
               <date>2015-05-08</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">TVIPS TEMCAM-F416 (4k x 4k)</film_or_detector_model>
                     <number_real_images>200</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">10</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">21.5</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>SPARX</name>
                  </software>
               </software_list>
               <number_images_used>6863</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="5489">
      <file>emd_3113.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>112</col>
         <row>112</row>
         <sec>112</sec>
      </dimensions>
      <origin>
         <col>-56</col>
         <row>-56</row>
         <sec>-56</sec>
      </origin>
      <spacing>
         <x>112</x>
         <y>112</y>
         <z>112</z>
      </spacing>
      <cell>
         <a units="&#8491;">519.68</a>
         <b units="&#8491;">519.68</b>
         <c units="&#8491;">519.68</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-2.40720606</minimum>
         <maximum>3.38514662</maximum>
         <average>-0.00031927</average>
         <std>0.10061946</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">4.64</x>
         <y units="&#8491;">4.64</y>
         <z units="&#8491;">4.64</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.125</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of Tse6-Tsi6-VgrG1-EagT6-EF-Tu complex</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3113::::</details>
   </map>
   <interpretation>
      <figure_list>
         <figure>
            <file>emd_3113.tif</file>
         </figure>
      </figure_list>
   </interpretation>
</emd>