2024-11-20 REL PDBj PDBj PDBj 2021-03-01 2021-06-09 2021-06-09 2024-11-20 SARS-CoV-2 S-6P in complex with 9 Fabs Du S Xiao J Zhang Z Antibody, Complex, VIRAL PROTEIN Cao Y Yisimayi A Bai Y Huang W Li X Zhang Z Yuan T An R Wang J Xiao T Du S Ma W Song L Li Y Li X Song W Wu J Liu S Li X Zhang Y Su B Guo X Wei Y Gao C Zhang N Zhang Y Dou Y Xu X Shi R Lu B Jin R Ma Y Qin C Wang Y Feng Y Xiao J Xie XS Humoral immune response to circulating SARS-CoV-2 variants elicited by inactivated and RBD-subunit vaccines. Cell Res. CN 31 732 741 2021 34021265 doi:10.1038/s41422-021-00514-9 1001-0602 7e8c FULLOVERLAP SARS-CoV-2 S-6P in complex with 9 Fabs SARS-CoV-2 S-6P in complex with 9 Fabs 0 1 2 3 4 5 6 7 Severe acute respiratory syndrome coronavirus 2 SARS-CoV-2 S 1 1 Homo sapiens 604 H, 604 L, N9 H, 368-2 L, 368-2 H, N9 L 1 2 3 4 5 6 7 Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 0.142468453 3 Homo sapiens LEVO MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG TITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALN TLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL QELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHEHHSAWSHPQFEKGGGSGGGGSGGSA WSHPQFEK P0DTC2 604 H Homo sapiens 0.023238120999999997 3 Homo sapiens LEVO EVQLVESGGGLIQPGGSLRLSCAASGIIVSSNYMTWVRQAPGKGLEWVSVIYSGGSTFYADSVKGRFTISRDKSKNTLYL QMSSLRAEDTAVYYCARDLGPYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD 604 L Homo sapiens 0.023290756 3 Homo sapiens LEVO DIQLTQSPSFLSASVGDRVTITCRASQGISSDLAWYQQKPGKAPNLLIYAASTLQSGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQQLNSDLYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC N9 H Homo sapiens 0.024300134999999997 3 Homo sapiens LEVO EVQLVESGGGLVKPGGSLRLSCAASEFTFSSYSMNWVRQAPGKGLEWVSSISSSGSQIYYADSVKGRFTISRDNAKKSLY LQMNSLRVEDTAVYYCATNGGAHSSTWSFYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK 368-2 L Homo sapiens 0.023901645 3 Homo sapiens LEVO DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYLYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKI SRVEAEDVGVYYCMQALQTPGTFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQ SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 368-2 H Homo sapiens 0.024355224999999998 3 Homo sapiens LEVO EVQLLESGGGVVQPGGSLRLSCAASGFAFTTYAMNWVRQAPGRGLEWVSAISDGGGSAYYADSVKGRFTISRDNSKNTLY LQMNSLRAEDTAVYYCAKTRGRGLYDYVWGSKDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK N9 L Homo sapiens 0.022525888999999997 3 Homo sapiens LEVO SYELTQPPSVSVSPGQTATITCSGDKLGDKYACWYQQRPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTIGGTQAM DEAAYFCQAWDSNTGVFGGGTKLTVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVE TTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS singleParticle particle 7.2 ETHANE FEI TITAN KRIOS FLOOD BEAM DARK FIELD FIELD EMISSION GUN 300 GATAN K2 QUANTUM (4k x 4k) 63.27 1 3.16 FSC 0.143 CUT-OFF 178557 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_31014.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 420.80002 420.80002 420.80002 90.0 90.0 90.0 X Y Z -0.07825016 0.18062654 0.00030811797 0.0028995133 1.052 1.052 1.052 0.0204 AUTHOR emd_31014_msk_1.map emd_31014_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 420.80002 420.80002 420.80002 90.0 90.0 90.0 X Y Z -0.027539076 0.08725988 0.00016945535 0.0035390214 1.052 1.052 1.052 AUTHOR emd_31014_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 420.80002 420.80002 420.80002 90.0 90.0 90.0 X Y Z -0.028255755 0.08648325 0.00017104046 0.0035391767 1.052 1.052 1.052 AUTHOR