<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3098" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-07-15</deposition>
         <header_release>2015-08-05</header_release>
         <map_release>2015-09-02</map_release>
         <update>2015-09-09</update>
      </key_dates>
      <title>Cryo-EM structure of bovine FoF1 ATP synthase</title>
      <authors_list>
         <author>Hauer F</author>
         <author>Gerle C</author>
         <author>Fischer N</author>
         <author>Oshima A</author>
         <author>Shinzawa-Itoh K</author>
         <author>Shimada S</author>
         <author>Yokoyama K</author>
         <author>Fujiyoshi Y</author>
         <author>Stark H</author>
      </authors_list>
      <keywords>mitochondria, bovine heart, Bos taurus, OXPHOS</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Hauer F</author>
               <author order="2">Gerle C</author>
               <author order="3">Fischer N</author>
               <author order="4">Oshima A</author>
               <author order="5">Shinzawa-Itoh K</author>
               <author order="6">Shimada S</author>
               <author order="7">Yokoyama K</author>
               <author order="8">Fujiyoshi Y</author>
               <author order="9">Stark H</author>
               <title>GraDeR: Membrane Protein Complex Preparation for Single-Particle Cryo-EM.</title>
               <journal>STRUCTURE</journal>
               <volume>23</volume>
               <first_page>1769</first_page>
               <last_page>1775</last_page>
               <year>2015</year>
               <external_references type="PUBMED">26278176</external_references>
               <external_references type="DOI">doi:10.1016/j.str.2015.06.029</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Bovine mitochondrial FoF1 ATP synthase</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Bovine mitochondrial FoF1 ATP synthase</name>
            <details>The sample was initially maintained in a buffer containing the detergent lauryl maltose-neopentyl glycol (LMNG). For cryo-EM preparation, free LMNG-monomers and micelles were removed using the GraDeR method.</details>
            <oligomeric_state>Monomer</oligomeric_state>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">0.6</experimental>
               <theoretical units="MDa">0.6</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="F-ATPase, ATP-synthase">FoF1 ATP synthase</name>
            <natural_source database="NCBI">
               <organism ncbi="9913">Bos taurus</organism>
               <synonym_organism>cattle</synonym_organism>
               <tissue>Heart</tissue>
               <organelle>Mitochondria</organelle>
               <cellular_location>Mitochondrial membrane</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.6</experimental>
               <theoretical units="MDa">0.6</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>Monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>8.0</ph>
                  <details>50 mM HEPES pH 8.0, 100 mM NaCl, 0.1% azide, 0.5 mM ADP and 5 mM MgCl2</details>
               </buffer>
               <grid>
                  <details>200 mesh copper Quantifoil grids (3.5/3.5) with custom-made holey carbon film covered by custom-made thin continuous carbon film</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">95</chamber_humidity>
                  <instrument>FEI VITROBOT MARK IV</instrument>
                  <details>Nitrocellulose paper was used to allow for slow blotting to avoid disintegration of the FoF1 ATP synthase complex</details>
                  <method>Slow blotting (15 seconds) at low blot force</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>SPOT SCAN</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">0.01</nominal_cs>
               <nominal_defocus_min units="&#181;m">2.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">5.0</nominal_defocus_max>
               <nominal_magnification>90000.0</nominal_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>Using a Cs-corrector from CEOS electron optical aberrations were corrected to residual phase errors of 45degree at scattering angles of &gt;12 to 15 mrad</astigmatism>
                  </legacy>
               </alignment_procedure>
               <date>2013-08-20</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">FEI FALCON II (4k x 4k)</film_or_detector_model>
                     <number_real_images>3956</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">50</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <ctf_correction>
               <details>local CTF correction</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <resolution res_type="BY AUTHOR" units="&#8491;">11.0</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>custom-made, IMAGIC-5, Relion, 1.2</name>
                  </software>
               </software_list>
               <number_images_used>13238</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="41595">
      <file>emd_3098.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>220</col>
         <row>220</row>
         <sec>220</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>220</x>
         <y>220</y>
         <z>220</z>
      </spacing>
      <cell>
         <a units="&#8491;">352.0</a>
         <b units="&#8491;">352.0</b>
         <c units="&#8491;">352.0</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-83.957611080000007</minimum>
         <maximum>147.609420779999994</maximum>
         <average>0.00000674</average>
         <std>10.20802784</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.6</x>
         <y units="&#8491;">1.6</y>
         <z units="&#8491;">1.6</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>31.0</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>3D map of bovine FoF1 ATP synthase</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3098::::</details>
   </map>
</emd>