2026-08-12 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY NON_POLYMER_DESCRIPTION chem_comp citation citation_author database_2 pdbx_validate_chiral _chem_comp.formula _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _database_2.pdbx_DOI _database_2.pdbx_database_accession DATA_COLLECTION chem_comp_atom chem_comp_bond STRUCTURE_SUMMARY em_admin em_software pdbx_entry_details _em_admin.last_update _em_software.name _pdbx_entry_details.has_protein_modification EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY chem_comp_atom em_admin pdbx_entry_details pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_struct_conn_angle pdbx_validate_chiral pdbx_validate_close_contact struct_conn struct_conn_type _chem_comp_atom.pdbx_stereo_config _em_admin.last_update _pdbx_entry_details.has_protein_modification EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update PDBj PDBj 2021-01-18 2021-06-30 2021-06-30 2026-08-12 Sui SF Shen JR Photosystem II; Cryo-EM; assembly; repair; Psb28; Tsl0063, PLANT PROTEIN Xiao Y Huang G You X Zhu Q Wang W Kuang T Han G Sui SF Shen JR Nat.Plants UK 7 1132 1142 2021 34226692 doi:10.1038/s41477-021-00961-7 2055-0278 7dxa FULLOVERLAP EMDB EMD-30902 associated EM volume

PSII intermediate Psb28-RC47

PSII intermediate Psb28-RC47 complex PSII intermediate Psb28-RC47 complex 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 Thermosynechococcus vulcanus Photosystem II reaction center Psb28 protein Thermosynechococcus vulcanus 0.013188769 1 LEVO MGAMAEIQFIRGINEEVVPDVRLTRARDGSSGQAMFYFDNPKIVQEGNLEVTGMYMVDEEGEIVTRDVNAKFINGQPVAI EATYTMRSPQEWDRFIRFMDRYAASHGLGFQKSENS Q8DLJ8 Tsl0063 protein Thermosynechococcus vulcanus 0.005943893 1 LEVO MRYTTDEGGRLNNFAIEPKVYQAQPWTPQQKVRAALLVGGGLLLVAGLVAIAVGVS Q8DMP8 Photosystem II protein D1 Thermosynechococcus vulcanus 0.039792366999999995 1 LEVO MTTTLQRRESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITG AVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLI YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFG QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWRVVGVWFAALGISTMAFNLNGFNFNHSVIDAKGNVINTWADI INRANLGMEVMHERNAHNFPLDLASAESAPVAMIAPSING P51765 Photosystem II CP47 reaction center protein Thermosynechococcus vulcanus 0.056068742 1 LEVO GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSIT GETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGL FGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSS IAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAK GGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSF YGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSG IDPELSPEQVEWGFYQKVGDVTTRK D0VWR1 Photosystem II D2 protein Thermosynechococcus vulcanus 0.038404949 1 LEVO ERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLL LLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFA PSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTAN RFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMA PQDQPHENFVFPEEVLPRGNAL D0VWR8 Cytochrome b559 subunit alpha Thermosynechococcus vulcanus 0.00958084 1 LEVO MAGTTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFL EQLK P12238 Cytochrome b559 subunit beta Thermosynechococcus vulcanus 0.005067899999999999 1 LEVO MTSNTPNQEPVSYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR P12239 Photosystem II reaction center protein H Thermosynechococcus vulcanus 0.007227559 1 LEVO ARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKALG P19052 Photosystem II reaction center protein I Thermosynechococcus vulcanus 0.004410244999999999 1 LEVO METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKDLE P12240 Photosystem II reaction center protein L Thermosynechococcus vulcanus 0.004299043999999999 1 LEVO MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN P12241 Photosystem II reaction center protein M Thermosynechococcus vulcanus 0.004015688 1 LEVO MEVNQLGFIATALFVLVPSVFLIILYVQTESQQKSS P12312 Photosystem II reaction center protein T Thermosynechococcus vulcanus 0.0038787279999999997 1 LEVO METITYVFIFACIIALFFFAIFFREPPRITKK P12313 Photosystem II reaction center protein X Thermosynechococcus vulcanus 0.004191029999999999 1 LEVO TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRSL D0VWR4 unidentified transmembrane protein Thermosynechococcus vulcanus 0.001652805 1 LEVO AAAAAAAAAAAAAAAAAAAAAAA 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL 0.0007951159999999999 2 SQD CHLOROPHYLL A 0.000893489 22 CLA PHEOPHYTIN A 0.0008712 2 PHO BETA-CAROTENE 0.000536873 6 BCR CHLORIDE ION 3.5453e-05 1 CL (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE 0.0006889719999999999 7 MGE UNKNOWN LIGAND 3.5453e-05 2 UNL DODECYL-BETA-D-MALTOSIDE 0.000510615 3 LMT FE (II) ION 5.5845e-05 1 FE2 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE 0.000612967 1 PQ9 heptyl 1-thio-beta-D-glucopyranoside 0.000294408 1 HTG DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 1 DGD PROTOPORPHYRIN IX CONTAINING FE 0.000616487 1 HEM singleParticle particle 6.5 ETHANE FEI TITAN KRIOS SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) 50.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 3.14 FSC 0.143 CUT-OFF 241790 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD