2021-03-31 REL PDBj PDBj PDBj 2021-01-18 2021-02-17 2021-02-17 2021-03-31 National Research Foundation (NRF, Singapore) NRF-NRFI2016-01 Singapore National Research Foundation (NRF, Singapore) NRF2017NRF-CRP001-027 Singapore National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) U54 AI 057157 United States Cryo-EM map of Dengue virus serotype 2 strain PVP94/07 in complex with human antibody 1C19 Fab at 40 deg C Fibriansah G Ng TS Kostyuchenko VA Shi J Lok SM Fibriansah G Lim EXY Marzinek JK Ng TS Tan JL Huber RG Lim XN Chew VSY Kostyuchenko VA Shi J Anand GS Bond PJ Crowe Jr JE Lok SM Antibody affinity versus dengue morphology influences neutralization. Plos Pathog. US 17 e1009331 e1009331 2021 33621239 doi:10.1371/journal.ppat.1009331 1553-7374 EMD-30885 other EM volume EMD-30886 associated EM volume Dengue virus serotype 2 strain PVP94/07 in complex with human antibody 1C19 Fab Dengue virus serotype 2 strain PVP94/07 in complex with human antibody 1C19 Fab 0 1 2 3 4
Dengue virus serotype 2 strain PVP94/07 was grown in Aedes albopictus C6/36 cells.
Dengue virus 2 PVP94/07 Dengue virus 2 1 1 2
Dengue virus serotype 2 strain PVP94/07
 human antibody 1C19 Fab 1 3 4
human antibody
 Dengue virus serotype 2 strain PVP94/07 envelope protein Dengue virus 2 PVP94/07 LEVO MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKHPATLRKYCVEAKLTNTTTASRCPTQGEPSLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKVVQPENLEYTIVITPHSGEENAVGNDTGKHGKEIKVTPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMENKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLSWFKKGSSIGQMFETTMRGAKRMAILGDTAWDFGSLGGVFTSIGKALHQVFGAIYGAAFSGVSWTMKILIGVVITWIGMNSRSTSLSVSLVLVGVVTLYLGVMVQA Dengue virus serotype 2 strain PVP94/07 membrane protein Dengue virus 2 PVP94/07 LEVO SVALVPHVGMGLETRTETWMSSEGAWKHAQRIETWILRHPGFTIMAAILAYTIGTTYFQRVLIFILLTAVTP Anti-dengue virus human monoclonal antibody 1C19 Fab heavy chain Homo sapiens LEVO QVQLVESGGGVVQPGRSLRLSCAASGFIFSNYGMHWVRQAPGKGLEWVAVISYDGSDKRY ADSVRGRFTISRDNSKNTLFLQVTSLRAEDTAVYYCAKELSGYDPGFEYWGQGTPVTVSS Anti-dengue virus human monoclonal antibody 1C19 Fab light chain Homo sapiens LEVO DIQMTQSPSTLSASVGDRVTITCRASQSINTWLAWYQQKPGKAPKLLIYKASSLESGVPS RFSGSGSGTEFTLTISSLQPDDFATYYCQQYESYATFGQGTKVDIK singleParticle particle 8.0
NTE buffer (12 mM Tris-HCl pH 8.0, 120 mM NaCl and 1 mM EDTA)
 ETHANE
The purified virus was incubated with Fab 1C19 at 40 deg C for 30 min with a molar ratio of one Fab for every E-protein and followed by incubation at 4 deg C for 2 h.
 FEI TITAN KRIOS SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 300 FEI FALCON II (4k x 4k) 18.0 1 37568 CTFFIND
CryoEM map of Dengue virus serotype 2 strain PVP94/07 at 29 deg C
 I 23.0 FSC 0.5 CUT-OFF MPSA 15360 MAXIMUM LIKELIHOOD RELION COMMON LINE MPSA emd_30886.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 -256 -256 -256 512 512 512 875.52 875.52 875.52 90.0 90.0 90.0 X Y Z -5.8288817 7.0135083 4.3742387e-09 1.0 1.71 1.71 1.71 1.7 AUTHOR CryoEM map of DENV2 strain PVP94/07 in complex with Fab 1C19 at 40 deg C