REL PDBe PDBe PDBe 2015-07-09 2015-07-22 2015-09-23 2015-09-23 negative stain EM of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195 Scharf L Wang H Gao H Chen S McDowall A Bjorkman P HIV-1 Env trimer, broadly neutralizing antibody Scharf L Wang H Gao H Chen S McDowall A Bjorkman P Broadly neutralizing antibody 8ANC195 recognizes closed and open states of HIV-1 Env CELL(CAMBRIDGE,MASS.) 162 1379 1390 2015 26359989 doi:10.1016/J.CELL.2015.08.035 5a7x FULLOVERLAP soluble HIV-1 Env trimer BG505 SOSIP.664 in complex with soluble CD4s (D1-D2), broadly neutralizing antibody 17b Fabs, and broadly neutralizing antibody 8ANC195 variant G32K5 Fabs soluble HIV-1 Env trimer BG505 SOSIP.664 in complex with soluble CD4s (D1-D2), broadly neutralizing antibody 17b Fabs, and broadly neutralizing antibody 8ANC195 variant G32K5 Fabs 3 Fabs of 17b, 3 sCD4, and 3 Fabs of 8ANC195 G52K5 bind to Env trimer BG505 SOSIP 4 0.5 Soluble HIV-1 Env trimer BG505 SOSIP.664 Human immunodeficiency virus 1 HIV-1 0.42 1 trimer true Homo sapiens HEK293-6E pTT5 Fab of broadly neutralizing antibody 17b Homo sapiens Human 0.05 3 monomer true Homo sapiens HEK293-6E pTT5 soluble CD4 (D1-D2 domains) Homo sapiens Human 0.02 3 monomer true Homo sapiens HEK293-6E pTT5 Fab of broadly neutralizing antibody 8ANC195 variant G52K5 Homo sapiens Human 0.05 3 monomer true Homo sapiens HEK293-6E pTT5 singleParticle particle 0.01 8.0
20mM Tris, 50mM NaCl
 NEGATIVE
Grids with adsorbed protein cross-linked by glutaraldehyde vapor and stained by 3% w/v uranyl acetate for 30 seconds.
glow discharged ultrathin C film on holey carbon support film, 400 mesh, Cu grids
 NONE OTHER FEI TECNAI 12 FLOOD BEAM BRIGHT FIELD LAB6 120 2.2 42000.0 SIDE ENTRY, EUCENTRIC 2015-04-07 GATAN ULTRASCAN 1000 (2k x 2k) 642
Particle were picked using EMAN2. CTF correction was done using EMAN2. 2D and 3D classification done using Relion to select good particles. Refinement done using Relion.
Each particle
 C3 OTHER 16.8 OTHER EMAN2, Relion 7174 25 emd_3086.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 320.0 320.0 320.0 90.0 90.0 90.0 X Y Z -0.07877693 0.0897764 -0.00034449 0.00837527 2.5 2.5 2.5 0.0269 AUTHOR negative stain EM single particle analysis. The particles were picked using EMAN2. CTF correction was done using EMAN2. 2D and 3D classification was done using Relion to sort particles. The refinement and gold-standard FSC calculation was done using Relion.
::::EMDATABANK.org::::EMD-3086::::
 1RZK G C L H RIGID BODY FIT Chimera
Fitted by manual docking first and then using Chimera with the following options: real-time correlation/average update, and use map simulated from atoms, resolution 15 A
REAL 4P9M L H RIGID BODY FIT Chimera
Fitted by manual docking first and then using Chimera with the following options: real-time correlation/average update, and use map simulated from atoms, resolution 15 A
REAL emd_3086_fsc.xml