2026-08-12 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY STRUCTURE_SUMMARY atom_site chem_comp entity pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_unobs_or_zero_occ_atoms _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_comp_id _atom_site.label_comp_id _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.comp_id _pdbx_entity_nonpoly.name _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id DATABASE_REFERENCES chem_comp_atom chem_comp_bond database_2 _database_2.pdbx_DOI _database_2.pdbx_database_accession STRUCTURE_SUMMARY em_admin em_software pdbx_entry_details _em_admin.last_update _em_software.name _pdbx_entry_details.has_protein_modification EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY em_admin pdbx_entry_details pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_struct_conn_angle struct_conn _em_admin.last_update _pdbx_entry_details.has_protein_modification EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update PDBj PDBj 2020-10-29 2021-06-30 2021-06-30 2026-08-12 Royal Society 180030 United Kingdom Biotechnology and Biological Sciences Research Council (BBSRC) R003890 United Kingdom Japan Agency for Medical Research and Development (AMED) JP20am0101082 Japan Japan Agency for Medical Research and Development (AMED) JP20am0101115 Japan Japan Society for the Promotion of Science (JSPS) JP 19H03162 Japan Bracun L Yamagata A membrane protein, light-harvesting, reaction center, pufx, PHOTOSYNTHESIS Bracun L Yamagata A Christianson BM Terada T Canniffe DP Shirouzu M Liu LN Sci Adv US 7 2021 34134992 doi:10.1126/sciadv.abf8864 2375-2548 7ddq FULLOVERLAP EMDB EMD-30656 associated EM volume

Structure of RC-LH1-PufX from Rhodobacter veldkampii

Photosynthetic core complex featuring reaction center, LH1 and PufX Photosynthetic core complex featuring reaction center, LH1 and PufX 0 3 4 5 6 Rhodobacter veldkampii DSM 11550 Antenna pigment protein alpha chain Rhodobacter veldkampii DSM 11550 0.0066990240000000005 15 LEVO MSKFYKIWLIFDPRRVFVAQGVFLFLLAVMIHLMLLSNPGFNWLDISGVKYERVAAE A0A2T4JIR4 Antenna pigment protein beta chain Rhodobacter veldkampii DSM 11550 0.005551439 15 LEVO MADKDLSFTGLTDQQAQELHSVYLQGMWLFISVAIVAHLAVFIWRPWL A0A2T4JIL7 PufX Rhodobacter veldkampii DSM 11550 0.008923259 1 LEVO MAEKHYLDGATKVGMATMGAAAMGKGMGITAVVFFGTVFFVVALAFIGQFLPDRSREAPYPNTIFQVNDIDGTVDGKYTR FAN A0A2T4JIP3 Photosynthetic reaction center L subunit Rhodobacter veldkampii DSM 11550 0.030896776999999997 1 LEVO MALLSFERKYRVPGGTLIGGNLFDFWVGPFYVGFFGVTSVFFAALGTLMILWGASLGDTWNPLLISINPPPLEYGLGAAP LREGGIWQVVTLCAIGAFVSWAMREVEICRKLGIGLHIPFAFSFAIFAYITLVVIRPALMGAWGHGFQYGVFTHLEWVNN VGYQYGNFHYNPLHMLGISLFFTTTLALGLHGALILSAANPETGKEMRTPDHEDTFFRDLVGYSVGTLGIHRLGLLLALN AAFWSAMCILASGTVWFDQWVFWWDWWYNLPFWADL A0A2T4JIS6 Reaction center protein M chain Rhodobacter veldkampii DSM 11550 0.034425746 1 LEVO MAEYQNIFTQVQVAGKPELGMVEGVNLENRTTGTTNWPILGWFGNAQLGPIYLGTLGTMSLIFGAFWFFLVGVSFIIQAD YSPALFLRELFRAGLFPPAPEYGLSLSAPLMEGGLWLIASFFLMLSVLLWWARTYKRAADLGMGKHTAWAFAGALWLMFV LSFFRPILMGSWSEAVPYGIFPHLDWTNNFSLTHGNLFYNPFHGLSIAFLYGSTMLFAMHGATILAVSRLGGERELEQIV DRGTAAERAALFWRWTMGFNATMEGIHRWGWWFAVLTPVTGGIGILLSGTVVEDWSVWAQVHGYKALN A0A2T4JIN0 Photosynthetic reaction center subunit H Rhodobacter veldkampii DSM 11550 0.027445557 1 LEVO MVGVNFFGDFDLASLAIWSFWLFFALLVYYLQTENMREGYPLENEDGGPAVNQGPFPLPSQKTFKLPHGRGEVTVPDYKK EARDVALARTAVNDGFPHAPTGNPMLDGVGPASWAPRRDIPELDGHGHAKVVPMSVASAFFVSAGRDPRGLPVIANDMKT VGTVTEMWVDVAEHMVRYLEVDLASGGKCLVPMTMAIIKKHAVVVQSISSAAFASVPQTKSMTEISMLEEEKICAYFAGG TMYCADAKPKLF A0A2T4JIP4 BACTERIOCHLOROPHYLL A 0.0009115039999999999 34 BCL SPHEROIDENE 0.000568914 15 SPO UBIQUINONE-10 0.0008633429999999999 6 U10 BACTERIOPHEOPHYTIN A 0.000889215 3 BPH FE (III) ION 5.5845e-05 1 FE 1,2-Distearoyl-sn-glycerophosphoethanolamine 0.000748065 3 3PE singleParticle particle 8.0 Quantifoil COPPER 300 CARBON ETHANE FEI TITAN KRIOS FLOOD BEAM DARK FIELD FIELD EMISSION GUN 300 GATAN K3 (6k x 4k) 48.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 2.84 FSC 0.143 CUT-OFF 184921 ANGULAR RECONSTITUTION ANGULAR RECONSTITUTION emd_30656_msk_1.map