2025-06-25 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name STRUCTURE_SUMMARY entity entity_name_com _entity.pdbx_description _entity_name_com.name STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond database_2 em_admin pdbx_entry_details pdbx_modification_feature _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update _pdbx_entry_details.has_protein_modification DATA_COLLECTION em_admin em_software _em_admin.last_update _em_software.name PDBj PDBj 2020-10-24 2020-12-02 2020-12-02 2025-06-25 Chinese Academy of Sciences XDB29040300 China Cong Y Liu CX VIRAL PROTEIN Zhang C Wang Y Zhu Y Liu C Gu C Xu S Wang Y Zhou Y Wang Y Han W Hong X Yang Y Zhang X Wang T Xu C Hong Q Wang S Zhao Q Qiao W Zang J Kong L Wang F Wang H Qu D Lavillette D Tang H Deng Q Xie Y Cong Y Huang Z Nat Commun UK 12 264 264 2021 33431876 doi:10.1038/s41467-020-20465-w 2041-1723 7dcc FULLOVERLAP Complex of SARC-CoV2-S protein with 3C1 fab, all the three RBDs are in the up conformation and each of them associates with a 3C1 Fab Complex of SARC-CoV2-S protein with 3C1 fab, all the three RBDs are in the up conformation and each of them associates with a 3C1 Fab 0 1 2 3 Mus musculus 3C1 fab with a heavy chain and a light chain 1 1 3 Severe acute respiratory syndrome coronavirus 2 SARC-CoV2-S protein 1 2 The heavy chain of 3C1 fab Mus musculus Balb/c 0.024151785 3 LEVO EVQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYL QLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 0.14005590599999998 3 Homo sapiens LEVO MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG TITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN TLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT FVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL QELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLENLYFQGDYKDDDDKHHHHHHHHH P0DTC2 The light chain of 3C1 fab Mus musculus Balb/c 0.023891330000000002 3 LEVO DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQS EDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC singleParticle particle 7.5 20.0 Tris-HCl 200.0 NaCl sodium chloride 4.0 glycerol Quantifoil COPPER CARBON HOLEY GLOW DISCHARGE 30

To handle the potential preferred orientation problem, for sample frozen using holey carbon grid, 0.05% Octyl beta-D-glucopyranoside (Sigma) or 0.1% polylysine (Polysciences) was added into the sample or applied on grid before freezing, respectively.

ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 6.45 49.6 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 4.3 FSC 0.143 CUT-OFF 71057 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD