<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3063" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-06-25</deposition>
         <header_release>2015-08-12</header_release>
         <map_release>2015-10-14</map_release>
         <update>2015-11-25</update>
      </key_dates>
      <title>Cryo-EM structure of the Slo2.2 Na+-activated K+ channel</title>
      <authors_list>
         <author>Hite RK</author>
         <author>Yuan P</author>
         <author>Li Z</author>
         <author>Hsuing Y</author>
         <author>Walz T</author>
         <author>MacKinnon R</author>
      </authors_list>
      <keywords>Ion channel, potassium channel</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Hite RK</author>
               <author order="2">Yuan P</author>
               <author order="3">Li Z</author>
               <author order="4">Hsuing Y</author>
               <author order="5">Walz T</author>
               <author order="6">MacKinnon R</author>
               <title>Cryo-electron microscopy structure of the Slo2.2 Na(+)-activated K(+) channel</title>
               <journal>NATURE</journal>
               <volume>527</volume>
               <first_page>198</first_page>
               <last_page>203</last_page>
               <year>2015</year>
               <external_references type="PUBMED">26436452</external_references>
               <external_references type="DOI">doi:10.1038/NATURE14958</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>5a6f</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>chicken Slo2.2</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>chicken Slo2.2</name>
            <oligomeric_state>tetramer</oligomeric_state>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">0.55</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="Slack, KCNT1">Slo2.2</name>
            <natural_source database="NCBI">
               <organism ncbi="9031">Gallus gallus</organism>
               <synonym_organism>chicken</synonym_organism>
               <cellular_location>Plasma membrane</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.55</experimental>
            </molecular_weight>
            <number_of_copies>4</number_of_copies>
            <oligomeric_state>tetramer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="7108">Spodoptera frugiperda</recombinant_organism>
               <recombinant_cell>Sf9</recombinant_cell>
               <recombinant_plasmid>pFastbac</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">Q8QFV0</external_references>
            </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">4.0</concentration>
               <buffer>
                  <ph>7.4</ph>
                  <details>20 mM HEPES pH 7.4, 300 mM KCl, 1.5 mM dodecyl maltoside, 0.05 mg/ml POPE:POPG (3:1)</details>
               </buffer>
               <grid>
                  <details>300 mesh Cu Quantifoil R1.2 / 1.3</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">84</chamber_humidity>
                  <chamber_temperature units="K">120</chamber_temperature>
                  <instrument>FEI VITROBOT MARK IV</instrument>
                  <method>4 second blot prior to plunging</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2.0</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">4.5</nominal_defocus_max>
               <nominal_magnification>105000.0</nominal_magnification>
               <calibrated_magnification>105000.0</calibrated_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>FEI Image corrector</astigmatism>
                  </legacy>
               </alignment_procedure>
               <specialist_optics>
                  <energy_filter>
                     <name>Gatan</name>
                     <lower_energy_threshold units="eV">0.0</lower_energy_threshold>
                     <upper_energy_threshold units="eV">30.0</upper_energy_threshold>
                  </energy_filter>
               </specialist_optics>
               <date>2014-07-07</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GATAN K2 (4k x 4k)</film_or_detector_model>
                     <digitization_details>
                        <sampling_interval units="&#181;m">5</sampling_interval>
                     </digitization_details>
                     <number_real_images>2243</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">40</average_electron_dose_per_image>
                     <details>25 sub-frames were recorded for each image in super-resolution counting mode.</details>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Manually picked particles with BOXER. 2D and 3D classification in RELION. Final map generated with RELION using a soft mask that includes only the gating ring.</details>
            <ctf_correction>
               <details>Each Image</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C4</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">4.2</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>SPARX, RELION</name>
                  </software>
               </software_list>
               <number_images_used>24231</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="65537">
      <file>emd_3063.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>256</col>
         <row>256</row>
         <sec>256</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>256</x>
         <y>256</y>
         <z>256</z>
      </spacing>
      <cell>
         <a units="&#8491;">266.24</a>
         <b units="&#8491;">266.24</b>
         <c units="&#8491;">266.24</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.01296597</minimum>
         <maximum>0.03799237</maximum>
         <average>-0.000052</average>
         <std>0.00295178</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.04</x>
         <y units="&#8491;">1.04</y>
         <z units="&#8491;">1.04</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.015</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Focus refined reconstruction of chicken Slo2.2 gating ring</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3063::::</details>
   </map>
   <interpretation>
      <figure_list>
         <figure>
            <file>emd_3063.png</file>
         </figure>
      </figure_list>
   </interpretation>
   <validation>
      <fsc_curve>
         <file>emd_3063_fsc.xml</file>
      </fsc_curve>
   </validation>
</emd>