2024-03-27 REL PDBj PDBj PDBj 2020-09-30 2021-03-17 2021-03-17 2024-03-27 National Natural Science Foundation of China (NSFC) 31670744 China National Natural Science Foundation of China (NSFC) 31961160723 China National Natural Science Foundation of China (NSFC) 31770794 China National Natural Science Foundation of China (NSFC) 31925026 China National Basic Research Program of China (973 Program) 2017YFA0504703 China Structural insights into membrane remodeling by SNX1 Zhang Y Pang X Coat complex, Membrane deformation, LIPID BINDING PROTEIN, helical assembly, PROTEIN TRANSPORT Zhang Y Pang X Li J Xu J Hsu VW Sun F Structural insights into membrane remodeling by SNX1. Proc.Natl.Acad.Sci.USA US 118 2021 33658379 doi:10.1073/pnas.2022614118 1091-6490 0040 PNASA6 7d6d FULLOVERLAP sorting nexin 1 sorting nexin 1 0 1
sorting nexin 1 in membrane-bound state
Mus musculus Sorting nexin-1 Mus musculus 0.059740887 16 Escherichia coli BL21(DE3) LEVO GPLGSPEFMASGGGGCSASERLPPPFPGMDPESEGAAGGSEPEAGDSDTEGEDIFTGAAAATKPQSPKKTTSLFPIKNGS KENGIHEDQDQEPQDLFADATVELSLDSTQNNQKTMPGKTLTSHPPQEATNSPKPQPSYEELEEEQEDQFDLTVGITDPE KIGDGMNAYVAYKVTTQTSLPMFRSRQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAE FLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQALSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKL QEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLA ELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKRESEARLLWANKPDKLQQAKDEITEWESRVTQYERDFERISTV VRKEVTRFEKEKSKDFKNHVMKYLETLLHSQQQLAKYWEAFLPEAKAIS Q6NZD2 helical helicalArray 0.9 7.4
50 mM HEPES, pH7.4, 100 mM NaCl
 Quantifoil R2/1 COPPER 300 CARBON HOLEY ARRAY PLASMA CLEANING ETHANE 100 FEI VITROBOT MARK IV
blot for 3.5 seconds with a blot force 2 before plunging.
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 59000.0 FEI TITAN KRIOS AUTOGRID HOLDER FEI FALCON II (4k x 4k) COUNTING 4096 4096 2-28 2 501 2.0 25.0
Images were collected in movie mode at 16 frames per second
 1
The selected images were multiplied by CTF for amplitude correction of reconstruction
1 8.76 60.13 C1 BACK PROJECTION 9.0 FSC 0.143 CUT-OFF IHRSR
IHRSR method were used for helical reconstruction and refinement with a range of out of plane tilt considered
11795 476
All the segments were selected manually using e2helixboxer.py of EMAN2
A cylinder with the same diameter as SNX1 tube was generated by Spider and used as initial model
 NOT APPLICABLE SPIDER 24.08 'pj 3q' was used to make initial model projections and 'ap sh' was used to make projection matching to assign Euler angles for each particle.
Final angle assignment were determined by projection matching with finer projection angle steps as the resolution is improved.
 emd_30592.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 120 -180 -180 -60 360 360 120 511.19998 511.19998 170.4 90.0 90.0 90.0 X Y Z -8.273277999999999 19.960701 0.39476934 3.0503304 1.42 1.42 1.42 6.42 AUTHOR FLEXIBLE FIT
The temperature was kept at 300K, time step was 1 fs, and secondary structure restraints was also included.
Correlation coefficient REAL