2024-03-27 REL PDBj PDBj PDBj 2020-09-07 2021-03-03 2021-03-03 2024-03-27 National Natural Science Foundation of China (NSFC) 31570736 China Protrusion structure of Omono River virus Shao Q Jia X Protrusion, Pentamer, five-fold vertex, VIRAL PROTEIN Shao Q Jia X Gao Y Liu Z Zhang H Tan Q Zhang X Zhou H Li Y Zhang Q Cryo-EM reveals a previously unrecognized structural protein of a dsRNA virus implicated in its extracellular transmission. Plos Pathog. US 17 e1009396 e1009396 2021 33730056 doi:10.1371/journal.ppat.1009396 1553-7374 7cz6 FULLOVERLAP Omono River virus Omono River virus 0 1
Protrusion structure located upon the five-fold vertex of the major capsid.
Omono River virus LZ Culex quinquefasciatus Major capsid 450.0 1 VIRION STRAIN false false Capsid protein Omono River virus LZ 0.01291753 1 LEVO IDCDSSVFGNNFNITTSPQTLTMSGPLAPGKYQTTLTVQALIGGTGVVVGTVTFAGKTVAYQVFDDSFASFDLGTVTVSA STTPSVIWTGSTGATLTMAVNIICKPITPTSVAISGQPIWTTPYAP singleParticle particle 7.4 136.89 NaCl sodium choride 2.67 KCl potassium chloride 8.1 Na2HPO4 disodium hydrogen phosphate 1.76 KH2PO4 potassium dihydrogen phosphate Quantifoil R1.2/1.3 COPPER 300 CARBON HOLEY GLOW DISCHARGE ETHANE 100 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 2.5 75000.0 NITROGEN FEI FALCON III (4k x 4k) COUNTING 39.0 1 1160016
Subtracted from every five-fold vertexes from 96668 virus particles. Each virus contains 12 five-fold vertexes. 96668x12=1160016.
 C5 4.1 FSC 0.143 CUT-OFF RELION 3.1 38935 MAXIMUM LIKELIHOOD RELION PROJECTION MATCHING jspr RELION 3.1 emd_30507.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 100 100 100 -50 -50 180 100 100 100 109.0 109.0 109.0 90.0 90.0 90.0 X Y Z -10.989091 13.088528 -0.000000003864251 1.0 1.09 1.09 1.09 3.5 AUTHOR AB INITIO MODEL REAL