2026-09-23 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY chem_comp chem_comp_bond em_admin pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_struct_conn_angle struct_conn _chem_comp.formula _em_admin.last_update STRUCTURE_SUMMARY em_admin pdbx_modification_feature _em_admin.last_update DATA_COLLECTION em_admin _em_admin.last_update EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update PDBj PDBj 2020-08-05 2021-03-31 2021-03-31 2026-09-23 Japan Society for the Promotion of Science (JSPS) 18H05175 Japan Japan Society for the Promotion of Science (JSPS) 16H04757 Japan Japan Society for the Promotion of Science (JSPS) 16H06554 Japan Japan Society for the Promotion of Science (JSPS) 20K06684 Japan Japan Agency for Medical Research and Development (AMED) Japan Structure of the far-red light utilizing photosystem I of Acaryochloris marina Kawakami K Yonekura K Photosynthesis, Photosystem I, Acaryochloris marina, Light-harvesting, Chlorophyll d Hamaguchi T Kawakami K Shinzawa-Itoh K Inoue-Kashino N Itoh S Ifuku K Yamashita E Maeda K Yonekura K Kashino Y Structure of the far-red light utilizing photosystem I of Acaryochloris marina. Nat Commun UK 12 2333 2333 2021 33879791 doi:10.1038/s41467-021-22502-8 2041-1723 7coy FULLOVERLAP EMDB EMD-30420 associated EM volume
Structure of the far-red light utilizing photosystem I of Acaryochloris
 Photosystem I complex from Acaryochloris marina Photosystem I complex from Acaryochloris marina 0 1 2 3 4 5 6 7 8 9 10 11 Acaryochloris marina Photosystem I P700 chlorophyll a apoprotein A1 Acaryochloris marina MBIC11017 MBIC 11017 0.083470539 3 LEVO MTTSPGGPETKGRTAEVDINPVSASLEVAGKPGHFNKSLSKGPQTTTWIWNLHALAHDFDTQTNDLEEISRKIFSAHFGH LSIIFVWISGMIFHAARFSNYYAWLADPLGNKPSAHVVWPIVGQDILNADVGNGFRGVQITSGLFHILRGAGMTDPGELY SAAIGALVAAVVMMYAGYYHYHKKAPKLEWFQNAESTMTHHLIVLLGLGNLAWTGHLIHVSLPVNKLLDSGVAPQDIPIP HEFLFDNGFMADLYPSFAQGLMPYFTLNWGAYSDFLTFKGGLDPTTGGLWMTDIAHHHLALAVMYIIAGHMYRTNWGIGH SMKEIMESHKGPFTGEGHKGLYEVLTTSWHAQLAINLATWGSFSIIVAHHMYAMPPYPYLATDYGTQLNLFVHHMWIGGF LIVGGAAHAAIFMVRDYDPAVNQNNVLDRMLRHRDTIISHLNWVCIFLGFHSFGLYIHNDNMRSLGRPQDMFSDTAIQLQ PIFSQWVQNLQANVAGTIRAPLAEGASSLAWGGDPLFVGGKVAMQHVSLGTADFMIHHIHAFQIHVTVLILIKGVLYARS SRLIPDKANLGFRFPCDGPGRGGTCQSSGWDHIFLGLFWMYNCISIVNFHFFWKMQSDVWGAANANGGVNYLTAGNWAQS SITINGWLRDFLWAQSVQVINSYGSALSAYGILFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHSKLKIAPAIQPRAM SITQGRAVGLGHYLLGGIVTSWSFYLARILALG B0C474 1.97.1.12 Photosystem I P700 chlorophyll a apoprotein A2 Acaryochloris marina MBIC110017 MBIC 11017 0.08221055499999999 3 LEVO MATKFPSFSQDLAQDPTTRRIWYGIATVHDFETHDGMTEENLYQKIFATHFGHLSIIFLWSAGHLFHVAWQGNFEQWIQD PLTIRPIAHAIWDPHLGDAATQAFTQAGASGPVDLCYSGLYQWWYTIGMRTNGDLYIGSVFLMIVAAVMLFAGWLHLQPK FRPSLAWFRDAESQMNHHLAVLFGASSLGWTGHLIHVAIPEARGQHVGWDNFLSTMPHPAGLAPFFTGRWGVYAQNPDTA GHIFGTSEGAGTAIITFIGGFHPQTEALWLTDIAHHHLAIAVMYIIAGHMYRTQFGIGHSMKEILEAHTPPSGMLGDAHK GLYDTYNESLHFQLGFHLAALGVITSVVAQHMYSLPSYAFISQDHVTQAALYTHHQYIAGILAIGAFAHGGIFFVRDYDP ERNKNNVLARALEHKEAIISHLSWVSMFSGFHTLGVYVHNDTVVAFGTPEKQILVEPIFAQWIQAAHGKLLLGFETLLSN PNGLAYNPPNISPDVFVPGWVEAMNNPVIGPFMSQGPGDFLVHHGIAFSLHVTVLICVKGCLDARGSKLMPDKKDFGYSF PCDGPGRGGTCDISAWDSFYLAFFWMLNTIGWIVFYFNWKHLAIWSGNEAQFNTNSTYLMGWLRDYLWGYSAQLINGYTP FGVNSLSVWAWIFLLGHLCWATGFLFLISWRGYWQELIETLVWAHQRTPLANLVTWKDKPVALSIVQGRLVGLVHFAVGY YVTYAAFVIGATAPLG B0C475 1.97.1.12 Photosystem I iron-sulfur center Acaryochloris marina MBIC110017 MBIC 11017 0.008825207 3 LEVO MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLA Y B0CB42 1.97.1.12 Photosystem I protein PsaD Acaryochloris marina MBIC110017 MBIC 11017 0.015114146 3 LEVO MAETLTGQTPLFGGSTGGLLSSAETEEKYAITWTSPKQQVFEMPTGGAAVMNEGENLLYLARKEQCLALGLRQLRTKKIM DYKIYRVLPDGSNTLLHPKDGVFPEKSNEGRAAVNSVARSIGENPNPGAIKYTGKKAYD B0C8F1 Photosystem I reaction center subunit IV Acaryochloris marina MBIC110017 MBIC 11017 0.009560822 3 LEVO MVQRGSKVRILRPESYWFREIGTVASVDQSGIKYPVIVRFDTCNYNGISGTAAGINTNNFGVHELEEVEAPKGGKKPAAK PAAAPKAEG B0C5D5 Photosystem I protein PsaF Acaryochloris marina MBIC110017 MBIC 11017 0.017844620999999998 3 LEVO MRRLFAVLLVMTLFLGVVPPASADIGGLVPCSESPKFQERAAKARNTTADPNSGQKRFEMYSSALCGPEDGLPRIIAGGP MRRAGDFLIPGLFFIYIAGGIGNSSRNYQIANRKKNAKNPAMGEIIIDVPLAVSSTIAGMAWPLTAFRELTSGELTVPDS DVTVSPR B0C7S7 Photosystem I protein Psa27 Acaryochloris marina MBIC11017 MBIC 11017 0.0036483369999999998 3 LEVO MISDILPAIMTPLVVLIGGGAAMTAFFYYVEREG Photosystem I reaction center subunit IX Acaryochloris marina MBIC110017 MBIC 11017 0.005900939 3 LEVO MGDVPLKIDSEKDFMKFFSTAPVIALVFFTLTAGFLVELNRFFPDILFFPY B0C7S6 Photosystem I reaction center subunit PsaK Acaryochloris marina MBIC 11017 MBIC 11017 0.009289071 3 LEVO MHPILLTTFESHPWTVNTGILMLFINLLMVFLGRYAIKYPGQGPALPIGVPDSMKDFGVPEMLATGVFAHWIGAGMILGL RSAGAL B0CA71 Photosystem I protein PsaL Acaryochloris marina MBIC 11017 MBIC 11017 0.015349587999999999 3 LEVO MTMDLVKHGGDPLVGDLATPVNSSGIVKAWINNLPAYRKGMSANARGLEIGMAHGYYLYGPFATSGPIRGTTMSLVSGVL SASAVVIVLSVAIQIYSSVSSAKPLPSVTTADPGSDFGTKEGWSAVGSGFLIGGCGGAVIAGVLSYAIAAFVG B0C7S4 Photosystem I protein PsaM Acaryochloris marina MBIC11017 MBIC 11017 0.0031908989999999996 3 LEVO MELSDLQIVIALVVALLPALLALNLGSALSK CHLOROPHYLL D ISOMER 0.000895462 3 G9R PHEOPHYTIN A 0.0008712 6 PHO CHLOROPHYLL D 0.000895462 210 CL7 UNKNOWN LIGAND 36 UNL 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 6 LHG PHYLLOQUINONE 0.000450696 6 PQN IRON/SULFUR CLUSTER 0.00035163999999999996 9 SF4 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 0.0007871579999999999 3 LMG water 1.8015e-05 84 HOH singleParticle particle 6.5 NITROGEN JEOL CRYO ARM 300 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) 85.7 1 PHASE FLIPPING AND AMPLITUDE CORRECTION
ab initio
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