2025-04-23 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES pdbx_database_related DATABASE_REFERENCES citation database_2 _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _database_2.pdbx_DOI _database_2.pdbx_database_accession STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond em_admin pdbx_entry_details pdbx_modification_feature _em_admin.last_update COORDINATE_REPLACEMENT AUTHOR Atomic clashes STRUCTURE_SUMMARY atom_site em_admin em_entity_assembly_molwt em_software entity entity_name_com entity_poly entity_poly_seq entity_src_nat pdbx_contact_author pdbx_modification_feature pdbx_poly_seq_scheme pdbx_struct_sheet_hbond pdbx_unobs_or_zero_occ_residues pdbx_validate_torsion struct_conf struct_conn struct_ref struct_ref_seq struct_sheet struct_sheet_order struct_sheet_range _em_admin.last_update _em_entity_assembly_molwt.units _entity.formula_weight _entity.pdbx_description _entity_name_com.name _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly_seq.entity_id _entity_poly_seq.mon_id _entity_poly_seq.num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.pdbx_organism_scientific _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.seq_id _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_seq_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_seq_id _struct_conf.end_label_comp_id _struct_conf.end_label_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.pdbx_PDB_helix_length _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_label_asym_id _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_seq_one_letter_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end _struct_ref_seq.pdbx_db_accession _struct_ref_seq.seq_align_end STRUCTURE_SUMMARY em_admin em_entity_assembly_molwt em_software entity entity_poly entity_src_nat struct_ref struct_ref_seq _em_admin.last_update _em_entity_assembly_molwt.units _entity.formula_weight _entity.pdbx_description _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_src_nat.pdbx_end_seq_num _entity_src_nat.pdbx_organism_scientific _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_seq_one_letter_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end _struct_ref_seq.pdbx_db_accession _struct_ref_seq.seq_align_end DATA_UPDATED REPOSITORY DATA_UPDATED REPOSITORY PDBj PDBj 2020-07-21 2021-06-02 2021-06-02 2025-04-23 Japan Society for the Promotion of Science (JSPS) JP25000013,JP18K06155,JP26293097,JP19H03182,JP15H01640 Japan Japan Agency for Medical Research and Development (AMED) JP19am0101117,JP17pc0101020 Japan CryoEM structure of S.typhimurium flagellar LP ring Yamaguchi T Makino F FlgH, FlgI, LP ring, Bushing, Salmonella, Flagellar motor, MOTOR PROTEIN Yamaguchi T Makino F Miyata T Minamino T Kato T Namba K Structure of the molecular bushing of the bacterial flagellar motor. Nat Commun UK 12 4469 4469 2021 34294704 doi:10.1038/s41467-021-24715-3 2041-1723 EMD-30409 other EM volume 7clr FULLOVERLAP LP ring LP ring 0 1 2
Bushing of flagellar motor
Salmonella enterica subsp. enterica serovar Typhimurium HK1002 Flagellar L-ring protein Salmonella enterica subsp. enterica serovar Typhimurium 0.024726666 26 LEVO MQKYALHAYPVMALMVATLTGCAWIPAKPLVQGATTAQPIPGPVPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTI VLQENVSASKSSSANASRDGKTSFGFDTVPRYLQGLFGNSRADMEASGGNSFNGKGGANASNTFSGTLTVTVDQVLANGN LHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNSVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM A0A0J5DWE9 Flagellar P-ring protein Salmonella enterica subsp. enterica serovar Typhimurium 0.038194175999999996 26 LEVO MFKALAGIVLALVATLAHAERIRDLTSVQGVRENSLIGYGLVVGLDGTGDQTTQTPFTTQTLNNMLSQLGITVPTGTNMQ LKNVAAVMVTASYPPFARQGQTIDVVVSSMGNAKSLRGGTLLMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQL NGGRITNGAIIERELPTQFGAGNTINLQLNDEDFTMAQQITDAINRARGYGSATALDARTVQVRVPSGNSSQVRFLADIQ NMEVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVAQGNLSVTVNRQLNVNQPNTPFGGGQTVVTPQTQIDLRQSGGSLQ SVRSSANLNSVVRALNALGATPMDLMSILQSMQSAGCLRAKLEII A0A0F7J5J5 singleParticle particle 8.0 50.0 C4H11NO3 Tris-HCl 50.0 NaCl Sodium chloride 25.0 C3H4N2 Imidazole 0.05 C47H88O22 Lauryl Maltose Neopentyl Glycol(LMNG) 0.05 Triton X-100 buffer Quantifoil R1.2/1.3 MOLYBDENUM CARBON CONTINUOUS GLOW DISCHARGE ETHANE 100 277 FEI VITROBOT MARK IV JEOL CRYO ARM 200 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 100.0 1.4 0.5 0.275 2.0 8.23 40000.0 JEOL CRYOSPECPORTER NITROGEN In-column Omega Filter GATAN K2 SUMMIT (4k x 4k) COUNTING 1-50 12759 10.0 45.0 1 64418
particles were picked up by YOLOPick.py (in-house python program)
 2 C26 FOURIER SPACE 3.5 FSC 0.143 CUT-OFF RELION 3.0 beta-2 10802 MAXIMUM LIKELIHOOD RELION 3.0 beta-2 MAXIMUM LIKELIHOOD RELION 3.0 beta-2 2 RELION 3.0 beta-2 emd_30398.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 -199 -199 -199 400 400 400 568.0 568.0 568.0 90.0 90.0 90.0 X Y Z -0.031408295 0.09122549 0.00021971043 0.002537645 1.42 1.42 1.42 0.017 AUTHOR CryoEM structure of S.typhimurium flagellar LP ring OTHER REAL 38.0 emd_30398_msk_1.map